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Answer: Answer: quality control scRNAseq
9 weeks ago by jv ★ 1.8k
2
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0
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342
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Answer: Answer: Single cell rna sequencing analysis using R help
10 weeks ago by jv ★ 1.8k
0
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0
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753
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Answer: Answer: Filter out doublet and Clustering
10 weeks ago by jv ★ 1.8k
1
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0
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482
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Answer: Answer: Significance of P value in GSEA
3 months ago by jv ★ 1.8k
0
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0
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520
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Answer: Answer: How to get raw mRNA count from Seurat converted anndata
3 months ago by jv ★ 1.8k
1
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0
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465
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Answer: Answer: Need a spatial transcriptomics cancer data
3 months ago by jv ★ 1.8k
0
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0
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345
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Answer: Answer: GTEx TPMs Vs normalized data
3 months ago by jv ★ 1.8k
2
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1
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601
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Answer: Answer: GO and KEGG
3 months ago by jv ★ 1.8k
0
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0
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222
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Answer: Answer: GEO database
3 months ago by jv ★ 1.8k
2
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0
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407
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Answer: Answer: Get the gene functions specific for clusters (RNA seq)
3 months ago by jv ★ 1.8k
0
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1
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1.1k
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Answer: Answer: I would like to exclude rRNA in RSEM and quantify other genes.
3 months ago by jv ★ 1.8k
0
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0
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526
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Answer: Answer: Enrichement with clusterProfiler and biomartr
4 months ago by jv ★ 1.8k
1
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2
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815
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Answer: Answer: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by jv ★ 1.8k
0
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0
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1.1k
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Answer: Answer: Install STAR on MacBook Pro M1
4 months ago by jv ★ 1.8k
0
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1
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1.4k
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Answer: Answer: Error in schicexplorer's hicbuildmatrix
5 months ago by jv ★ 1.8k
1
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1
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824
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Answer: Answer: Getting gene counts from transcript counts using R package 'tximport'
5 months ago by jv ★ 1.8k
0
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0
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562
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Answer: Answer: R ComplexHeatmap - Adujusting the cell size in heatmap
5 months ago by jv ★ 1.8k
0
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0
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308
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Answer: Answer: Need Help Mapping Probe IDs to Gene Symbols
5 months ago by jv ★ 1.8k
0
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0
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582
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Answer: Answer: RNA seq
5 months ago by jv ★ 1.8k
0
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0
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883
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Answer: Answer: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
updated 5 months ago by 43k • written 5 months ago by ★ 1.8k
2
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1
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730
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Answer: Answer: Is there a need to batch correct FPKM or TPM values for within sample comparison
5 months ago by jv ★ 1.8k
0
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0
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347
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Answer: Answer: DESeq2 with unbalanced dataset and multifactor design
6 months ago by jv ★ 1.8k
1
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0
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547
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Answer: Answer: Database of Mapped Data for Single Cell Sequencing
6 months ago by jv ★ 1.8k
1
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0
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476
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Answer: Answer: Analysis and results microarray data for research
6 months ago by jv ★ 1.8k
1
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0
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742
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Answer: Answer: Is it possible to add a dendrogram as a top annotation using ComplexHeatmap ?
11 months ago by jv ★ 1.8k
1
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1
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2.4k
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Answer: Answer: active.ident slot present but not recognized in seurat object
12 months ago by jv ★ 1.8k
0
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0
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675
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Answer: Answer: GSEA with duplicate sample
12 months ago by jv ★ 1.8k
0
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0
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427
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Answer: Answer: Please help with edgeR script
13 months ago by jv ★ 1.8k
2
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1
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1.6k
views
Answer: Answer: annotation_names_side does not work in complexheatmap package
13 months ago by jv ★ 1.8k
0
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1
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985
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Answer: Answer: PSEUDOBULK HELP-DE Expression in scRNA-seq
13 months ago by jv ★ 1.8k
0
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0
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1.4k
views
Answer: Answer: Issue in installing any package in R
13 months ago by jv ★ 1.8k
0
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1
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21k
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Answer: Answer: How to get subset of a Seurat object based on metadata?
13 months ago by jv ★ 1.8k
1
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1
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2.8k
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Answer: Answer: ClusterProfiler enrichKEGG – remove organism name in plots?
14 months ago by jv ★ 1.8k
1
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1
reply
1.9k
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Answer: Answer: Running AUCell on integrated scRNAseq data
14 months ago by jv ★ 1.8k
2
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1
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2.4k
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Answer: Answer: How exactly can I define promoter region from GENCODE annotation GTF file?
14 months ago by jv ★ 1.8k
3
votes
1
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1.2k
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Answer: Answer: How to annotate a MACS2 peak output file that is in tabular format?
14 months ago by jv ★ 1.8k
0
votes
1
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506
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Answer: Answer: Bam to bedgraph
14 months ago by jv ★ 1.8k
1
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1
reply
1.1k
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Answer: Answer: Merge common elements in R
15 months ago by jv ★ 1.8k
2
votes
1
reply
805
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Answer: Answer: Is there a package that can do downstream analysis of single-cell V(D)J sequenci
15 months ago by jv ★ 1.8k
3
votes
0
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1.6k
views
Answer: Answer: How does enrichGO function calculated p-value?
15 months ago by jv ★ 1.8k
0
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0
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1.1k
views
Answer: Answer: Assigning multiple identities to seurat metadata
updated 15 months ago by 43k • written 15 months ago by ★ 1.8k
0
votes
2
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858
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Answer: Answer: expression of the GAT1 transport protein
15 months ago by jv ★ 1.8k
2
votes
1
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739
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Answer: Answer: want the codes for cuffdiff , NIOSeq , bayseq to perform DEGs.
15 months ago by jv ★ 1.8k
2
votes
0
replies
808
views
Answer: Answer: How to merge unique/non overlapping genes between 2 gene model GFF3 files?
15 months ago by jv ★ 1.8k
0
votes
1
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1.0k
views
Answer: Answer: Trimmomatic
15 months ago by jv ★ 1.8k
1
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1
reply
1.1k
views
Answer: Answer: Single sample GSEA analysis
15 months ago by jv ★ 1.8k
2
votes
1
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572
views
Answer: Answer: How do I remove certain reads from my raw sequencing data using BLAST?
15 months ago by jv ★ 1.8k
1
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1
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2.3k
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Answer: Answer: GSEA on nonmodel organisms
15 months ago by jv ★ 1.8k
3
votes
0
replies
1.2k
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Answer: Answer: Gene Set Enrichment Analysis, pathway, metabolism
15 months ago by jv ★ 1.8k
1
vote
0
replies
657
views
Answer: Answer: deconvolution of spatial transcriptome
16 months ago by jv ★ 1.8k
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