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Answer: Answer: I would like to exclude rRNA in RSEM and quantify other genes.
3 months ago by jv ★ 1.8k
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372
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Comment: Comment: Create Signature Matrix Cibersort
3 months ago by jv ★ 1.8k
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495
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Answer: Answer: Enrichement with clusterProfiler and biomartr
3 months ago by jv ★ 1.8k
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0
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495
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Comment: Comment: Enrichement with clusterProfiler and biomartr
3 months ago by jv ★ 1.8k
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1
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407
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Comment: Comment: Estimating the similarity of an RNA-seq sample based on a reference expression p
4 months ago by jv ★ 1.8k
1
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0
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785
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by jv ★ 1.8k
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0
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785
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by jv ★ 1.8k
1
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1
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785
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by jv ★ 1.8k
1
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2
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785
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Answer: Answer: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by jv ★ 1.8k
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0
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1.0k
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Comment: Comment: Install STAR on MacBook Pro M1
4 months ago by jv ★ 1.8k
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1.0k
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Answer: Answer: Install STAR on MacBook Pro M1
4 months ago by jv ★ 1.8k
0
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1
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372
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Comment: Comment: From nucleotide or proteine sequences to EC number using biopython
4 months ago by jv ★ 1.8k
1
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0
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859
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Comment: Comment: Quantile normalisation on RNAseq with substantial differences on sample size
4 months ago by jv ★ 1.8k
1
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1
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540
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Comment: Comment: Obtain fitted data from DESeq2
4 months ago by jv ★ 1.8k
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491
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Comment: Comment: sample data for plant RNA seq analysis
4 months ago by jv ★ 1.8k
2
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1
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761
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Comment: Comment: No genes mapped in clusterprofiler gseGO
4 months ago by jv ★ 1.8k
1
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1
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761
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Comment: Comment: No genes mapped in clusterprofiler gseGO
4 months ago by jv ★ 1.8k
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1
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761
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Comment: Comment: No genes mapped in clusterprofiler gseGO
4 months ago by jv ★ 1.8k
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0
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3.9k
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Comment: Comment: No gene can be mapped
4 months ago by jv ★ 1.8k
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1
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338
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Comment: Comment: Ribo-Seq Samtools pileup
4 months ago by jv ★ 1.8k
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0
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1.4k
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Comment: Comment: Error in schicexplorer's hicbuildmatrix
4 months ago by jv ★ 1.8k
0
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1
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1.4k
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Comment: Comment: Error in schicexplorer's hicbuildmatrix
4 months ago by jv ★ 1.8k
0
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1
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1.4k
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Answer: Answer: Error in schicexplorer's hicbuildmatrix
4 months ago by jv ★ 1.8k
1
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1
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791
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Answer: Answer: Getting gene counts from transcript counts using R package 'tximport'
4 months ago by jv ★ 1.8k
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0
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355
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Comment: Comment: Database for immunological pathways
4 months ago by jv ★ 1.8k
0
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0
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543
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Answer: Answer: R ComplexHeatmap - Adujusting the cell size in heatmap
4 months ago by jv ★ 1.8k
1
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1
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1.1k
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Comment: Comment: Finding differentially expressed genes between Seurat clusters
4 months ago by jv ★ 1.8k
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1
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1.4k
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Comment: Comment: Error in schicexplorer's hicbuildmatrix
4 months ago by jv ★ 1.8k
2
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0
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968
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Comment: Comment: How to remove center population from seurat cluster
4 months ago by jv ★ 1.8k
1
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0
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641
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Comment: Comment: ORA with clusterProfiler
4 months ago by jv ★ 1.8k
1
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1
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665
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Comment: Comment: Overlapping and merging ChIP-seq peaks
4 months ago by jv ★ 1.8k
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0
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304
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Answer: Answer: Need Help Mapping Probe IDs to Gene Symbols
5 months ago by jv ★ 1.8k
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1
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1.1k
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Comment: Comment: Finding differentially expressed genes between Seurat clusters
5 months ago by jv ★ 1.8k
0
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1
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1.4k
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Comment: Comment: i ues schicexplorer's hicbuildmatrix code complains that two sam files do not ha
5 months ago by jv ★ 1.8k
1
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0
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483
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Comment: Comment: KEGG DATABASE
5 months ago by jv ★ 1.8k
0
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0
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569
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Answer: Answer: RNA seq
5 months ago by jv ★ 1.8k
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0
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332
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Comment: Comment: Contrasts in R
5 months ago by jv ★ 1.8k
0
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0
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855
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Answer: Answer: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
updated 5 months ago by 43k • written 5 months ago by ★ 1.8k
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858
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Comment: Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
5 months ago by jv ★ 1.8k
2
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1
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707
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Answer: Answer: Is there a need to batch correct FPKM or TPM values for within sample comparison
5 months ago by jv ★ 1.8k
1
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0
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498
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Comment: Comment: R ComplexHeatmap - Dividing Column Annotation into Distinct Y-Axis Scales
5 months ago by jv ★ 1.8k
0
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1
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498
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Comment: Comment: R ComplexHeatmap - Dividing Column Annotation into Distinct Y-Axis Scales
5 months ago by jv ★ 1.8k
0
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1
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1.1k
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Comment: Comment: Data preparation for a ML model
5 months ago by jv ★ 1.8k
0
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0
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331
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Answer: Answer: DESeq2 with unbalanced dataset and multifactor design
5 months ago by jv ★ 1.8k
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2
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1.1k
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Comment: Comment: Data preparation for a ML model
5 months ago by jv ★ 1.8k
1
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1
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1.1k
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Comment: Comment: Data preparation for a ML model
5 months ago by jv ★ 1.8k
0
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0
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645
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Comment: Comment: Selecting a subset of MSigDB database for GSEA
5 months ago by jv ★ 1.8k
0
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1
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996
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Comment: Comment: scRNA-seq quality control
5 months ago by jv ★ 1.8k
1
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0
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541
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Answer: Answer: Database of Mapped Data for Single Cell Sequencing
6 months ago by jv ★ 1.8k
0
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0
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550
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Comment: Comment: WGCNA
6 months ago by jv ★ 1.8k
382 results • Page 2 of 8
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