Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.8k
views
Comment: Comment: How to handle duplicated genes in TCGA data?
16 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
902
views
Comment: Comment: Genotyping sites with N in reference genome
16 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
904
views
Comment: Comment: Extracting mutation status from MAF files - TCGA
16 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
1.3k
views
Comment: Comment: Obtaining Infinium Methylation450K manifest for hg38
16 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
609
views
Answer: Answer: Nomalization - TCGA, RNA-seq and Microarray
16 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
1.8k
views
Comment: Comment: The GDC Legacy Archive is retiring soon.
16 months ago by Zhenyu Zhang ★ 1.3k
1
vote
1
reply
1.7k
views
Comment: Comment: How to access TCGA samples that were treated with a specific drug?
16 months ago by Zhenyu Zhang ★ 1.3k
1
vote
2
replies
1.8k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
16 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
1.7k
views
Comment: Comment: Method to detect genome doubling
17 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
703
views
Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
17 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
578
views
Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
17 months ago by Zhenyu Zhang ★ 1.3k
1
vote
0
replies
1.5k
views
Answer: Answer: Artificial deletion in bam
17 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
855
views
Answer: Answer: Help with finding Genomic coordinates and exon they belong to
17 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
556
views
Answer: Answer: Quantify the junction abundance?
17 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
903
views
Answer: Answer: lncRNA from TCGA
17 months ago by Zhenyu Zhang ★ 1.3k
2
votes
0
replies
805
views
Answer: Answer: Can I have multiple active GDC download tokens?
17 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
749
views
Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
18 months ago by Zhenyu Zhang ★ 1.3k
1
vote
0
replies
788
views
Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
18 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
537
views
Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 18 months ago by 45k • written 18 months ago by ★ 1.3k
0
votes
2
replies
3.1k
views
Answer: Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
18 months ago by Zhenyu Zhang ★ 1.3k
1
vote
1
reply
1.1k
views
Answer: Answer: TCGA metadata intersection
18 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
710
views
Comment: Comment: How to map CPTAC digital pathology slides to sample ID and metadata
18 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
706
views
Answer: Answer: How to find clinical data for TARGET AML
19 months ago by Zhenyu Zhang ★ 1.3k
1
vote
0
replies
1.6k
views
Comment: Comment: How to identify biallelic mutations called using WES data?
19 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
1.8k
views
Comment: Comment: TCGA Biospecimens Slides Extraction
19 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
1.8k
views
Comment: Comment: TCGA Biospecimens Slides Extraction
19 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
1.8k
views
Comment: Comment: TCGA Biospecimens Slides Extraction
19 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
1.2k
views
Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
19 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
1.1k
views
Answer: Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
19 months ago by Zhenyu Zhang ★ 1.3k
1
vote
1
reply
1.1k
views
Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
19 months ago by Zhenyu Zhang ★ 1.3k
1
vote
0
replies
2.7k
views
Comment: Comment: Is it possible to access the code of a bioinformatics article?
19 months ago by Zhenyu Zhang ★ 1.3k
1
vote
1
reply
2.7k
views
Answer: Answer: Is it possible to access the code of a bioinformatics article?
20 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
1.6k
views
Comment: Comment: Manhattan Plot
20 months ago by Zhenyu Zhang ★ 1.3k
1
vote
0
replies
1.0k
views
Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
20 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
1.9k
views
Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
20 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
1.9k
views
Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
20 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
1.6k
views
Comment: Comment: Understanding gene level copy number data from TCGAbiolinks
21 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
1.0k
views
Answer: Answer: Help doing differential expression analysis -experimental design and gProfiler T
21 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
1.2k
views
Answer: Answer: Diferences between TCGAbiolinks and cBioportal
21 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
1.1k
views
Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
22 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
953
views
Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
22 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
953
views
Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
22 months ago by Zhenyu Zhang ★ 1.3k
1
vote
0
replies
1.3k
views
Comment: Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
22 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
1.1k
views
Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
22 months ago by Zhenyu Zhang ★ 1.3k
0
votes
1
reply
1.9k
views
Comment: Comment: Help locating TCGA data from cbioportal
22 months ago by Zhenyu Zhang ★ 1.3k
2
votes
1
reply
1.3k
views
Answer: Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
22 months ago by Zhenyu Zhang ★ 1.3k
1
vote
0
replies
1.7k
views
Comment: Comment: different sample size between TCGA portal and TCGAbiolinks package
22 months ago by Zhenyu Zhang ★ 1.3k
1
vote
0
replies
1.8k
views
Comment: Comment: CPTAC data download, transcriptomics
23 months ago by Zhenyu Zhang ★ 1.3k
0
votes
0
replies
1.1k
views
Answer: Answer: cptac data download
23 months ago by Zhenyu Zhang ★ 1.3k
2
votes
0
replies
3.3k
views
Comment: Comment: Can BWA (mem) detect longer deletions?
23 months ago by Zhenyu Zhang ★ 1.3k
301 results • Page 2 of 7
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6