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Answer: Answer: How to check the quality of VCF file for GWAS analysis
3.2 years ago by raphael.B ▴ 540
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Answer: Answer: Count all variants from vcf file
3.2 years ago by raphael.B ▴ 540
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Answer: Answer: BEDtools merge output
3.2 years ago by raphael.B ▴ 540
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Comment: Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
3.3 years ago by raphael.B ▴ 540
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Comment: Comment: Writing a function in R which will identify peaks within a data frame
3.3 years ago by raphael.B ▴ 540
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Comment: Comment: A question about BED file and finding mutation in vcf file
3.3 years ago by raphael.B ▴ 540
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Comment: Comment: Snakemake wildcards overwriting one another
3.3 years ago by raphael.B ▴ 540
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Answer: Answer: How to Create a multi-sample VCF file
3.3 years ago by raphael.B ▴ 540
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Answer: Answer: Set random genotypes to missing in VCF file by individuals and sites
3.3 years ago by raphael.B ▴ 540
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Comment: Comment: Find consecutive duplicate strings in rows from df
3.3 years ago by raphael.B ▴ 540
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Comment: Comment: Pass a python dictionary as a snakemake variable (input and output)
3.3 years ago by raphael.B ▴ 540
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1.8k
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Answer: Answer: Find consecutive duplicate strings in rows from df
3.3 years ago by raphael.B ▴ 540
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Comment: Comment: Pass a python dictionary as a snakemake variable (input and output)
3.3 years ago by raphael.B ▴ 540
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3.0k
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Comment: Comment: Samtools mean depth and max depth results are discordant
3.3 years ago by raphael.B ▴ 540
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2.1k
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Answer: Answer: VCF file
3.3 years ago by raphael.B ▴ 540
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3.0k
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Comment: Comment: Samtools mean depth and max depth results are discordant
3.3 years ago by raphael.B ▴ 540
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2.6k
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Comment: Comment: Python - Samtools mpileup find snps with allele frequency
3.4 years ago by raphael.B ▴ 540
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2.6k
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Comment: Comment: Python - Samtools mpileup find snps with allele frequency
3.4 years ago by raphael.B ▴ 540
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2.6k
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Comment: Comment: Python - Samtools mpileup find snps with allele frequency
3.4 years ago by raphael.B ▴ 540
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6.3k
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Answer: Answer: BCFtools allele frequency for specific population
3.7 years ago by raphael.B ▴ 540
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Comment: Comment: Snakemake error
3.7 years ago by raphael.B ▴ 540
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Comment: Comment: How to extract gene name and transcript name from the INFO column of a VCF file
3.7 years ago by raphael.B ▴ 540
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1.8k
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Answer: Answer: How to extract gene name and transcript name from the INFO column of a VCF file
3.7 years ago by raphael.B ▴ 540
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Comment: Comment: How to compare vcf files and keep only their differencies ?
3.7 years ago by raphael.B ▴ 540
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902
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Comment: Comment: Annotating a VCF ignoring ALT
3.7 years ago by raphael.B ▴ 540
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Comment: Comment: Snakemake cyclic dependency for gather operations
3.8 years ago by raphael.B ▴ 540
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1.4k
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Comment: Comment: Snakemake cyclic dependency for gather operations
3.8 years ago by raphael.B ▴ 540
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Answer: Answer: Snakemake error
3.8 years ago by raphael.B ▴ 540
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3.1k
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Comment: Comment: mutation found in RNA seq data and not in DNA data
3.8 years ago by raphael.B ▴ 540
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3.1k
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Comment: Comment: mutation found in RNA seq data and not in DNA data
3.8 years ago by raphael.B ▴ 540
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Comment: Comment: GATK QC where I start?
3.8 years ago by raphael.B ▴ 540
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Comment: Comment: Gene Length
3.9 years ago by raphael.B ▴ 540
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rvtest fails after Snpeff annotation: Core dumped error
snpeff Genomics rvtests
4.6 years ago by raphael.B ▴ 540
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