Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
2
votes
3
replies
277
views
Using GPUs in snakemake
Parabricks
gpu
snakemake
slurm
10 days ago by
raphael.B
▴ 520
1
vote
0
replies
277
views
Answer:
Answer: Using GPUs in snakemake
10 days ago by
raphael.B
▴ 520
1
vote
2
replies
669
views
Comment:
Comment: RNA-seq pipeline
3 months ago by
raphael.B
▴ 520
2
votes
1
reply
836
views
Answer:
Answer: Individual vs. joint call VCFs
4 months ago by
raphael.B
▴ 520
0
votes
1
reply
442
views
Comment:
Comment: bcftools=1.18 not filtering correcting MAF
4 months ago by
raphael.B
▴ 520
0
votes
1
reply
677
views
Answer:
Answer: Ann.vcf format
7 months ago by
raphael.B
▴ 520
1
vote
0
replies
570
views
Answer:
Answer: functional and genome annotation analysis
7 months ago by
raphael.B
▴ 520
0
votes
0
replies
533
views
Answer:
Answer: BCFtools isec output vs BCFtools query
updated 7 months ago by
Ram
43k • written 7 months ago by
raphael.B
▴ 520
2
votes
0
replies
481
views
Answer:
Answer: Association Study
7 months ago by
raphael.B
▴ 520
1
vote
0
replies
4.2k
views
Answer:
Answer: RVtests CMC output column definitions
8 months ago by
raphael.B
▴ 520
0
votes
0
replies
934
views
Answer:
Answer: matching gnomAD allele frequency
8 months ago by
raphael.B
▴ 520
0
votes
1
reply
1.6k
views
Answer:
Answer: GATK memory error with Java
8 months ago by
raphael.B
▴ 520
2
votes
0
replies
1.2k
views
Answer:
Answer: Convert files made for b38 into hg19 human reference?
8 months ago by
raphael.B
▴ 520
0
votes
0
replies
1.6k
views
Comment:
Comment: Problem with mamba/conda env create
8 months ago by
raphael.B
▴ 520
1
vote
2
replies
1.6k
views
Comment:
Comment: Problem with mamba/conda install
8 months ago by
raphael.B
▴ 520
1
vote
0
replies
687
views
Comment:
Comment: Hwo to identify that BQSR is performed on CRAM file
9 months ago by
raphael.B
▴ 520
1
vote
1
reply
687
views
Answer:
Answer: Hwo to identify that BQSR is performed on CRAM file
9 months ago by
raphael.B
▴ 520
0
votes
0
replies
608
views
Comment:
Comment: rust_htslib unrecognized filter ID
10 months ago by
raphael.B
▴ 520
2
votes
2
replies
608
views
rust_htslib unrecognized filter ID
htslib
rust
SNP
filtering
10 months ago by
raphael.B
▴ 520
0
votes
0
replies
687
views
Comment:
Comment: Processing WES VCF for case control GWAS analysis
10 months ago by
raphael.B
▴ 520
0
votes
2
replies
893
views
Answer:
Answer: bcftools "--filter-logic" flag, what + means?
10 months ago by
raphael.B
▴ 520
1
vote
2
replies
726
views
Answer:
Answer: how to call variants in haploid genome
10 months ago by
raphael.B
▴ 520
0
votes
0
replies
923
views
Comment:
Comment: vcftools on 2 snpeff vcf files
11 months ago by
raphael.B
▴ 520
0
votes
1
reply
923
views
Comment:
Comment: vcftools on 2 snpeff vcf files
11 months ago by
raphael.B
▴ 520
2
votes
1
reply
923
views
Answer:
Answer: vcftools on 2 snpeff vcf files
11 months ago by
raphael.B
▴ 520
1
vote
1
reply
944
views
Comment:
Comment: Any tutorial how to "link" SNPs with genes?
12 months ago by
raphael.B
▴ 520
0
votes
1
reply
2.2k
views
Comment:
Comment: Snakemake doesn't recognize output files even though they are created
12 months ago by
raphael.B
▴ 520
0
votes
1
reply
2.2k
views
Comment:
Comment: Snakemake doesn't recognize output files even though they are created
12 months ago by
raphael.B
▴ 520
2
votes
0
replies
972
views
Comment:
Comment: error with CombineGVCFs to join large number of files
12 months ago by
raphael.B
▴ 520
2
votes
0
replies
831
views
Answer:
Answer: multiallelic variants
13 months ago by
raphael.B
▴ 520
1
vote
1
reply
1.6k
views
Comment:
Comment: GATK GenotypeGVCFs explain
13 months ago by
raphael.B
▴ 520
2
votes
0
replies
573
views
Answer:
Answer: Snakemake error to build synteny from BUSCO .tsv
13 months ago by
raphael.B
▴ 520
0
votes
0
replies
668
views
Comment:
Comment: filter VCF based on FORMAT
13 months ago by
raphael.B
▴ 520
2
votes
0
replies
664
views
Answer:
Answer: bcftools merge without multiallelic sites
13 months ago by
raphael.B
▴ 520
3
votes
0
replies
525
views
Answer:
Answer: use fastQC to get one summary report for all the multiple .gz files
13 months ago by
raphael.B
▴ 520
1
vote
0
replies
1.4k
views
Answer:
Answer: Merge several input files to single output file snakemake
13 months ago by
raphael.B
▴ 520
0
votes
1
reply
1.6k
views
Comment:
Comment: GATK4.3 ApplyBQSR
14 months ago by
raphael.B
▴ 520
0
votes
1
reply
998
views
Comment:
Comment: AF=NA in gnomad vcf
updated 16 months ago by
Ram
43k • written 16 months ago by
raphael.B
▴ 520
1
vote
1
reply
998
views
Answer:
Answer: AF=NA in gnomad vcf
updated 16 months ago by
Ram
43k • written 16 months ago by
raphael.B
▴ 520
1
vote
0
replies
790
views
Answer:
Answer: STAR Aligment
16 months ago by
raphael.B
▴ 520
0
votes
0
replies
790
views
Comment:
Comment: STAR Aligment
16 months ago by
raphael.B
▴ 520
0
votes
0
replies
2.1k
views
Answer:
Answer: Count missing and non missing values in a VCF file
18 months ago by
raphael.B
▴ 520
1
vote
0
replies
815
views
Comment:
Comment: Representation of variables in PCA
19 months ago by
raphael.B
▴ 520
1
vote
1
reply
854
views
Answer:
Answer: bcftools merge doesn't recalculate AF
19 months ago by
raphael.B
▴ 520
0
votes
0
replies
847
views
Answer:
Answer: How to check the quality of VCF file for GWAS analysis
19 months ago by
raphael.B
▴ 520
1
vote
1
reply
681
views
Answer:
Answer: Count all variants from vcf file
20 months ago by
raphael.B
▴ 520
1
vote
0
replies
726
views
Answer:
Answer: BEDtools merge output
20 months ago by
raphael.B
▴ 520
0
votes
1
reply
854
views
Comment:
Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
21 months ago by
raphael.B
▴ 520
0
votes
0
replies
1.2k
views
Comment:
Comment: Writing a function in R which will identify peaks within a data frame
21 months ago by
raphael.B
▴ 520
3
votes
1
reply
911
views
Comment:
Comment: A question about BED file and finding mutation in vcf file
21 months ago by
raphael.B
▴ 520
77 results • Page
1 of 2
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6