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Answer: Answer: Proposal on CNV (Copies Variants Numer) analysis tools
5 months ago by raphael.B ▴ 540
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904
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Bonferroni correction for burden by transcripts
Association-test statistics
updated 10 months ago by ★ 8.5k • written 10 months ago by ▴ 540
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1.1k
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Comment: Comment: Output checks during Snakemake pipeline
14 months ago by raphael.B ▴ 540
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0
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971
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Answer: Answer: How can I Obtain hg38 cancer mutation and variation files
14 months ago by raphael.B ▴ 540
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0
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834
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Answer: Answer: Generating a Python parsable local db from dbSNP
14 months ago by raphael.B ▴ 540
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0
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905
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Comment: Comment: A USER ERROR has occurred: Bad input: Values for QD annotation not detected for
14 months ago by raphael.B ▴ 540
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0
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1.0k
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Comment: Comment: Snakemake rule to copy files
15 months ago by raphael.B ▴ 540
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1
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1.2k
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Comment: Comment: BAM to Bedgraph creating an empty file
17 months ago by raphael.B ▴ 540
2
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3
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1.3k
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Using GPUs in snakemake
Parabricks gpu snakemake slurm
19 months ago by raphael.B ▴ 540
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0
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1.3k
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Answer: Answer: Using GPUs in snakemake
19 months ago by raphael.B ▴ 540
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2
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1.6k
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Comment: Comment: RNA-seq pipeline
22 months ago by raphael.B ▴ 540
2
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1
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3.9k
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Answer: Answer: Individual vs. joint call VCFs
23 months ago by raphael.B ▴ 540
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1.2k
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Comment: Comment: bcftools=1.18 not filtering correcting MAF
23 months ago by raphael.B ▴ 540
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1
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1.7k
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Answer: Answer: Ann.vcf format
2.2 years ago by raphael.B ▴ 540
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0
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1.2k
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Answer: Answer: functional and genome annotation analysis
2.2 years ago by raphael.B ▴ 540
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0
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1.2k
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Answer: Answer: BCFtools isec output vs BCFtools query
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 540
2
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0
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895
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Answer: Answer: Association Study
2.2 years ago by raphael.B ▴ 540
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0
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5.4k
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Answer: Answer: RVtests CMC output column definitions
2.2 years ago by raphael.B ▴ 540
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0
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2.7k
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Answer: Answer: matching gnomAD allele frequency
2.3 years ago by raphael.B ▴ 540
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1
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4.6k
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Answer: Answer: GATK memory error with Java
2.3 years ago by raphael.B ▴ 540
2
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0
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3.4k
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Answer: Answer: Convert files made for b38 into hg19 human reference?
2.3 years ago by raphael.B ▴ 540
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0
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3.5k
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Comment: Comment: Problem with mamba/conda env create
2.3 years ago by raphael.B ▴ 540
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2
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3.5k
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Comment: Comment: Problem with mamba/conda install
2.3 years ago by raphael.B ▴ 540
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0
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1.6k
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Comment: Comment: Hwo to identify that BQSR is performed on CRAM file
2.3 years ago by raphael.B ▴ 540
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1
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1.6k
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Answer: Answer: Hwo to identify that BQSR is performed on CRAM file
2.3 years ago by raphael.B ▴ 540
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0
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1.5k
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Comment: Comment: rust_htslib unrecognized filter ID
2.4 years ago by raphael.B ▴ 540
2
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2
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1.5k
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rust_htslib unrecognized filter ID
htslib rust SNP filtering
2.4 years ago by raphael.B ▴ 540
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0
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1.2k
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Comment: Comment: Processing WES VCF for case control GWAS analysis
2.4 years ago by raphael.B ▴ 540
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2
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1.8k
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Answer: Answer: bcftools "--filter-logic" flag, what + means?
2.4 years ago by raphael.B ▴ 540
1
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2
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1.3k
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Answer: Answer: how to call variants in haploid genome
2.4 years ago by raphael.B ▴ 540
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0
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1.9k
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Comment: Comment: vcftools on 2 snpeff vcf files
2.5 years ago by raphael.B ▴ 540
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1
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1.9k
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Comment: Comment: vcftools on 2 snpeff vcf files
2.5 years ago by raphael.B ▴ 540
2
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1
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1.9k
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Answer: Answer: vcftools on 2 snpeff vcf files
2.5 years ago by raphael.B ▴ 540
1
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1
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1.8k
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Comment: Comment: Any tutorial how to "link" SNPs with genes?
2.5 years ago by raphael.B ▴ 540
2
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0
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1.9k
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Comment: Comment: error with CombineGVCFs to join large number of files
2.6 years ago by raphael.B ▴ 540
2
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0
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1.6k
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Answer: Answer: multiallelic variants
2.6 years ago by raphael.B ▴ 540
1
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1
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3.1k
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Comment: Comment: GATK GenotypeGVCFs explain
2.6 years ago by raphael.B ▴ 540
2
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0
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942
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Answer: Answer: Snakemake error to build synteny from BUSCO .tsv
2.7 years ago by raphael.B ▴ 540
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0
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1.2k
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Comment: Comment: filter VCF based on FORMAT
2.7 years ago by raphael.B ▴ 540
2
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0
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1.1k
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Answer: Answer: bcftools merge without multiallelic sites
2.7 years ago by raphael.B ▴ 540
3
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0
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863
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Answer: Answer: use fastQC to get one summary report for all the multiple .gz files
2.7 years ago by raphael.B ▴ 540
1
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0
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3.1k
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Answer: Answer: Merge several input files to single output file snakemake
2.7 years ago by raphael.B ▴ 540
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1
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2.8k
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Comment: Comment: GATK4.3 ApplyBQSR
2.7 years ago by raphael.B ▴ 540
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1
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2.1k
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Comment: Comment: AF=NA in gnomad vcf
updated 2.9 years ago by 45k • written 2.9 years ago by ▴ 540
1
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1
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2.1k
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Answer: Answer: AF=NA in gnomad vcf
updated 2.9 years ago by 45k • written 2.9 years ago by ▴ 540
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0
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1.6k
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Answer: Answer: STAR Aligment
2.9 years ago by raphael.B ▴ 540
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0
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1.6k
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Comment: Comment: STAR Aligment
2.9 years ago by raphael.B ▴ 540
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0
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4.4k
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Answer: Answer: Count missing and non missing values in a VCF file
3.1 years ago by raphael.B ▴ 540
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0
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1.2k
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Comment: Comment: Representation of variables in PCA
3.1 years ago by raphael.B ▴ 540
1
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1
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1.8k
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Answer: Answer: bcftools merge doesn't recalculate AF
3.1 years ago by raphael.B ▴ 540
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