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1
vote
1
reply
964
views
Answer:
Answer: Proposal on CNV (Copies Variants Numer) analysis tools
6 weeks ago by
raphael.B
▴ 540
2
votes
1
reply
716
views
Bonferroni correction for burden by transcripts
Association-test
statistics
updated 6 months ago by
Gordon Smyth
★ 8.2k • written 6 months ago by
raphael.B
▴ 540
0
votes
1
reply
868
views
Comment:
Comment: Output checks during Snakemake pipeline
10 months ago by
raphael.B
▴ 540
0
votes
0
replies
769
views
Answer:
Answer: How can I Obtain hg38 cancer mutation and variation files
10 months ago by
raphael.B
▴ 540
0
votes
0
replies
659
views
Answer:
Answer: Generating a Python parsable local db from dbSNP
10 months ago by
raphael.B
▴ 540
0
votes
0
replies
761
views
Comment:
Comment: A USER ERROR has occurred: Bad input: Values for QD annotation not detected for
10 months ago by
raphael.B
▴ 540
0
votes
0
replies
819
views
Comment:
Comment: Snakemake rule to copy files
11 months ago by
raphael.B
▴ 540
0
votes
1
reply
1.0k
views
Comment:
Comment: BAM to Bedgraph creating an empty file
13 months ago by
raphael.B
▴ 540
2
votes
3
replies
1.1k
views
Using GPUs in snakemake
Parabricks
gpu
snakemake
slurm
15 months ago by
raphael.B
▴ 540
1
vote
0
replies
1.1k
views
Answer:
Answer: Using GPUs in snakemake
15 months ago by
raphael.B
▴ 540
1
vote
2
replies
1.4k
views
Comment:
Comment: RNA-seq pipeline
18 months ago by
raphael.B
▴ 540
2
votes
1
reply
3.2k
views
Answer:
Answer: Individual vs. joint call VCFs
19 months ago by
raphael.B
▴ 540
0
votes
1
reply
988
views
Comment:
Comment: bcftools=1.18 not filtering correcting MAF
19 months ago by
raphael.B
▴ 540
0
votes
1
reply
1.4k
views
Answer:
Answer: Ann.vcf format
22 months ago by
raphael.B
▴ 540
1
vote
0
replies
1.0k
views
Answer:
Answer: functional and genome annotation analysis
22 months ago by
raphael.B
▴ 540
0
votes
0
replies
1.0k
views
Answer:
Answer: BCFtools isec output vs BCFtools query
updated 22 months ago by
Ram
45k • written 22 months ago by
raphael.B
▴ 540
2
votes
0
replies
771
views
Answer:
Answer: Association Study
22 months ago by
raphael.B
▴ 540
1
vote
0
replies
5.0k
views
Answer:
Answer: RVtests CMC output column definitions
22 months ago by
raphael.B
▴ 540
0
votes
0
replies
2.0k
views
Answer:
Answer: matching gnomAD allele frequency
23 months ago by
raphael.B
▴ 540
0
votes
1
reply
3.9k
views
Answer:
Answer: GATK memory error with Java
23 months ago by
raphael.B
▴ 540
2
votes
0
replies
2.7k
views
Answer:
Answer: Convert files made for b38 into hg19 human reference?
23 months ago by
raphael.B
▴ 540
0
votes
0
replies
3.2k
views
Comment:
Comment: Problem with mamba/conda env create
23 months ago by
raphael.B
▴ 540
1
vote
2
replies
3.2k
views
Comment:
Comment: Problem with mamba/conda install
23 months ago by
raphael.B
▴ 540
1
vote
0
replies
1.4k
views
Comment:
Comment: Hwo to identify that BQSR is performed on CRAM file
23 months ago by
raphael.B
▴ 540
1
vote
1
reply
1.4k
views
Answer:
Answer: Hwo to identify that BQSR is performed on CRAM file
24 months ago by
raphael.B
▴ 540
0
votes
0
replies
1.2k
views
Comment:
Comment: rust_htslib unrecognized filter ID
2.1 years ago by
raphael.B
▴ 540
2
votes
2
replies
1.2k
views
rust_htslib unrecognized filter ID
htslib
rust
SNP
filtering
2.1 years ago by
raphael.B
▴ 540
0
votes
0
replies
1.1k
views
Comment:
Comment: Processing WES VCF for case control GWAS analysis
2.1 years ago by
raphael.B
▴ 540
0
votes
2
replies
1.6k
views
Answer:
Answer: bcftools "--filter-logic" flag, what + means?
2.1 years ago by
raphael.B
▴ 540
1
vote
2
replies
1.1k
views
Answer:
Answer: how to call variants in haploid genome
2.1 years ago by
raphael.B
▴ 540
0
votes
0
replies
1.6k
views
Comment:
Comment: vcftools on 2 snpeff vcf files
2.2 years ago by
raphael.B
▴ 540
0
votes
1
reply
1.6k
views
Comment:
Comment: vcftools on 2 snpeff vcf files
2.2 years ago by
raphael.B
▴ 540
2
votes
1
reply
1.6k
views
Answer:
Answer: vcftools on 2 snpeff vcf files
2.2 years ago by
raphael.B
▴ 540
1
vote
1
reply
1.6k
views
Comment:
Comment: Any tutorial how to "link" SNPs with genes?
2.2 years ago by
raphael.B
▴ 540
2
votes
0
replies
1.8k
views
Comment:
Comment: error with CombineGVCFs to join large number of files
2.3 years ago by
raphael.B
▴ 540
2
votes
0
replies
1.4k
views
Answer:
Answer: multiallelic variants
2.3 years ago by
raphael.B
▴ 540
1
vote
1
reply
2.8k
views
Comment:
Comment: GATK GenotypeGVCFs explain
2.3 years ago by
raphael.B
▴ 540
2
votes
0
replies
858
views
Answer:
Answer: Snakemake error to build synteny from BUSCO .tsv
2.3 years ago by
raphael.B
▴ 540
0
votes
0
replies
1.1k
views
Comment:
Comment: filter VCF based on FORMAT
2.3 years ago by
raphael.B
▴ 540
2
votes
0
replies
983
views
Answer:
Answer: bcftools merge without multiallelic sites
2.3 years ago by
raphael.B
▴ 540
3
votes
0
replies
755
views
Answer:
Answer: use fastQC to get one summary report for all the multiple .gz files
2.4 years ago by
raphael.B
▴ 540
1
vote
0
replies
2.8k
views
Answer:
Answer: Merge several input files to single output file snakemake
2.4 years ago by
raphael.B
▴ 540
0
votes
1
reply
2.5k
views
Comment:
Comment: GATK4.3 ApplyBQSR
2.4 years ago by
raphael.B
▴ 540
0
votes
1
reply
1.7k
views
Comment:
Comment: AF=NA in gnomad vcf
updated 2.6 years ago by
Ram
45k • written 2.6 years ago by
raphael.B
▴ 540
1
vote
1
reply
1.7k
views
Answer:
Answer: AF=NA in gnomad vcf
updated 2.6 years ago by
Ram
45k • written 2.6 years ago by
raphael.B
▴ 540
1
vote
0
replies
1.4k
views
Answer:
Answer: STAR Aligment
2.6 years ago by
raphael.B
▴ 540
0
votes
0
replies
1.4k
views
Comment:
Comment: STAR Aligment
2.6 years ago by
raphael.B
▴ 540
0
votes
0
replies
3.9k
views
Answer:
Answer: Count missing and non missing values in a VCF file
2.7 years ago by
raphael.B
▴ 540
1
vote
0
replies
1.1k
views
Comment:
Comment: Representation of variables in PCA
2.8 years ago by
raphael.B
▴ 540
1
vote
1
reply
1.6k
views
Answer:
Answer: bcftools merge doesn't recalculate AF
2.8 years ago by
raphael.B
▴ 540
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