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Comment: Comment: Output checks during Snakemake pipeline
3 months ago by raphael.B ▴ 520
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0
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397
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Answer: Answer: How can I Obtain hg38 cancer mutation and variation files
3 months ago by raphael.B ▴ 520
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296
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Answer: Answer: Generating a Python parsable local db from dbSNP
3 months ago by raphael.B ▴ 520
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0
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466
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Comment: Comment: A USER ERROR has occurred: Bad input: Values for QD annotation not detected for
3 months ago by raphael.B ▴ 520
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0
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471
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Comment: Comment: Snakemake rule to copy files
4 months ago by raphael.B ▴ 520
0
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1
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469
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Comment: Comment: BAM to Bedgraph creating an empty file
6 months ago by raphael.B ▴ 520
2
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3
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667
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Using GPUs in snakemake
Parabricks gpu snakemake slurm
8 months ago by raphael.B ▴ 520
1
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0
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667
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Answer: Answer: Using GPUs in snakemake
8 months ago by raphael.B ▴ 520
1
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2
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945
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Comment: Comment: RNA-seq pipeline
11 months ago by raphael.B ▴ 520
2
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1
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1.7k
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Answer: Answer: Individual vs. joint call VCFs
11 months ago by raphael.B ▴ 520
0
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1
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670
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Comment: Comment: bcftools=1.18 not filtering correcting MAF
12 months ago by raphael.B ▴ 520
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1
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977
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Answer: Answer: Ann.vcf format
15 months ago by raphael.B ▴ 520
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0
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751
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Answer: Answer: functional and genome annotation analysis
15 months ago by raphael.B ▴ 520
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0
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748
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Answer: Answer: BCFtools isec output vs BCFtools query
updated 15 months ago by 44k • written 15 months ago by ▴ 520
2
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0
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617
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Answer: Answer: Association Study
15 months ago by raphael.B ▴ 520
1
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0
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4.5k
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Answer: Answer: RVtests CMC output column definitions
15 months ago by raphael.B ▴ 520
0
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0
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1.3k
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Answer: Answer: matching gnomAD allele frequency
16 months ago by raphael.B ▴ 520
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1
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2.6k
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Answer: Answer: GATK memory error with Java
16 months ago by raphael.B ▴ 520
2
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0
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1.9k
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Answer: Answer: Convert files made for b38 into hg19 human reference?
16 months ago by raphael.B ▴ 520
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0
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2.4k
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Comment: Comment: Problem with mamba/conda env create
16 months ago by raphael.B ▴ 520
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2
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2.4k
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Comment: Comment: Problem with mamba/conda install
16 months ago by raphael.B ▴ 520
1
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0
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916
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Comment: Comment: Hwo to identify that BQSR is performed on CRAM file
16 months ago by raphael.B ▴ 520
1
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1
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916
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Answer: Answer: Hwo to identify that BQSR is performed on CRAM file
16 months ago by raphael.B ▴ 520
0
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0
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784
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Comment: Comment: rust_htslib unrecognized filter ID
17 months ago by raphael.B ▴ 520
2
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2
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784
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rust_htslib unrecognized filter ID
htslib rust SNP filtering
17 months ago by raphael.B ▴ 520
0
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0
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874
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Comment: Comment: Processing WES VCF for case control GWAS analysis
18 months ago by raphael.B ▴ 520
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2
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1.1k
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Answer: Answer: bcftools "--filter-logic" flag, what + means?
18 months ago by raphael.B ▴ 520
1
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2
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883
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Answer: Answer: how to call variants in haploid genome
18 months ago by raphael.B ▴ 520
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0
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1.2k
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Comment: Comment: vcftools on 2 snpeff vcf files
19 months ago by raphael.B ▴ 520
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1
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1.2k
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Comment: Comment: vcftools on 2 snpeff vcf files
19 months ago by raphael.B ▴ 520
2
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1
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1.2k
views
Answer: Answer: vcftools on 2 snpeff vcf files
19 months ago by raphael.B ▴ 520
1
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1
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1.2k
views
Comment: Comment: Any tutorial how to "link" SNPs with genes?
19 months ago by raphael.B ▴ 520
2
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0
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1.3k
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Comment: Comment: error with CombineGVCFs to join large number of files
20 months ago by raphael.B ▴ 520
2
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0
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1.1k
views
Answer: Answer: multiallelic variants
20 months ago by raphael.B ▴ 520
1
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1
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2.2k
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Comment: Comment: GATK GenotypeGVCFs explain
20 months ago by raphael.B ▴ 520
2
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0
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695
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Answer: Answer: Snakemake error to build synteny from BUSCO .tsv
21 months ago by raphael.B ▴ 520
0
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0
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831
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Comment: Comment: filter VCF based on FORMAT
21 months ago by raphael.B ▴ 520
2
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0
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809
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Answer: Answer: bcftools merge without multiallelic sites
21 months ago by raphael.B ▴ 520
3
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0
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622
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Answer: Answer: use fastQC to get one summary report for all the multiple .gz files
21 months ago by raphael.B ▴ 520
1
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0
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2.0k
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Answer: Answer: Merge several input files to single output file snakemake
21 months ago by raphael.B ▴ 520
0
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1
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2.0k
views
Comment: Comment: GATK4.3 ApplyBQSR
21 months ago by raphael.B ▴ 520
0
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1
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1.3k
views
Comment: Comment: AF=NA in gnomad vcf
updated 24 months ago by 44k • written 24 months ago by ▴ 520
1
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1
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1.3k
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Answer: Answer: AF=NA in gnomad vcf
updated 24 months ago by 44k • written 24 months ago by ▴ 520
1
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0
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1.1k
views
Answer: Answer: STAR Aligment
2.0 years ago by raphael.B ▴ 520
0
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0
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1.1k
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Comment: Comment: STAR Aligment
2.0 years ago by raphael.B ▴ 520
0
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0
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3.0k
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Answer: Answer: Count missing and non missing values in a VCF file
2.1 years ago by raphael.B ▴ 520
1
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0
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934
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Comment: Comment: Representation of variables in PCA
2.2 years ago by raphael.B ▴ 520
1
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1
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1.2k
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Answer: Answer: bcftools merge doesn't recalculate AF
2.2 years ago by raphael.B ▴ 520
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0
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1.1k
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Answer: Answer: How to check the quality of VCF file for GWAS analysis
2.3 years ago by raphael.B ▴ 520
1
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1
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926
views
Answer: Answer: Count all variants from vcf file
2.3 years ago by raphael.B ▴ 520
81 results • Page 1 of 2
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