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Answer: Answer: Ann.vcf format
23 days ago by raphael.B ▴ 460
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0
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354
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Answer: Answer: functional and genome annotation analysis
26 days ago by raphael.B ▴ 460
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0
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270
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Answer: Answer: BCFtools isec output vs BCFtools query
updated 27 days ago by 40k • written 27 days ago by ▴ 460
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0
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294
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Answer: Answer: Association Study
5 weeks ago by raphael.B ▴ 460
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0
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3.9k
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Answer: Answer: RVtests CMC output column definitions
6 weeks ago by raphael.B ▴ 460
0
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0
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485
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Answer: Answer: matching gnomAD allele frequency
8 weeks ago by raphael.B ▴ 460
0
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1
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737
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Answer: Answer: GATK memory error with Java
9 weeks ago by raphael.B ▴ 460
2
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0
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595
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Answer: Answer: Convert files made for b38 into hg19 human reference?
9 weeks ago by raphael.B ▴ 460
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0
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581
views
Comment: Comment: Problem with mamba/conda env create
10 weeks ago by raphael.B ▴ 460
1
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2
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581
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Comment: Comment: Problem with mamba/conda install
10 weeks ago by raphael.B ▴ 460
1
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0
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427
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Comment: Comment: Hwo to identify that BQSR is performed on CRAM file
10 weeks ago by raphael.B ▴ 460
1
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1
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427
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Answer: Answer: Hwo to identify that BQSR is performed on CRAM file
10 weeks ago by raphael.B ▴ 460
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0
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433
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Comment: Comment: rust_htslib unrecognized filter ID
3 months ago by raphael.B ▴ 460
2
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2
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433
views
rust_htslib unrecognized filter ID
htslib rust SNP filtering
3 months ago by raphael.B ▴ 460
0
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0
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411
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Comment: Comment: Processing WES VCF for case control GWAS analysis
4 months ago by raphael.B ▴ 460
0
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2
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592
views
Answer: Answer: bcftools "--filter-logic" flag, what + means?
4 months ago by raphael.B ▴ 460
0
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1
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388
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Answer: Answer: how to call variants in haploid genome
4 months ago by raphael.B ▴ 460
0
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0
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586
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Comment: Comment: vcftools on 2 snpeff vcf files
5 months ago by raphael.B ▴ 460
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1
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586
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Comment: Comment: vcftools on 2 snpeff vcf files
5 months ago by raphael.B ▴ 460
2
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1
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586
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Answer: Answer: vcftools on 2 snpeff vcf files
5 months ago by raphael.B ▴ 460
1
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1
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548
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Comment: Comment: Any tutorial how to "link" SNPs with genes?
5 months ago by raphael.B ▴ 460
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1
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1.6k
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Comment: Comment: Snakemake doesn't recognize output files even though they are created
5 months ago by raphael.B ▴ 460
0
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1
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1.6k
views
Comment: Comment: Snakemake doesn't recognize output files even though they are created
6 months ago by raphael.B ▴ 460
2
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0
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647
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Comment: Comment: error with CombineGVCFs to join large number of files
6 months ago by raphael.B ▴ 460
2
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0
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554
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Answer: Answer: multiallelic variants
6 months ago by raphael.B ▴ 460
1
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1
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934
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Comment: Comment: GATK GenotypeGVCFs explain
6 months ago by raphael.B ▴ 460
2
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0
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428
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Answer: Answer: Snakemake error to build synteny from BUSCO .tsv
6 months ago by raphael.B ▴ 460
0
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0
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484
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Comment: Comment: filter VCF based on FORMAT
6 months ago by raphael.B ▴ 460
2
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0
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447
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Answer: Answer: bcftools merge without multiallelic sites
6 months ago by raphael.B ▴ 460
3
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0
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382
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Answer: Answer: use fastQC to get one summary report for all the multiple .gz files
7 months ago by raphael.B ▴ 460
1
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0
replies
927
views
Answer: Answer: Merge several input files to single output file snakemake
7 months ago by raphael.B ▴ 460
0
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1
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1.3k
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Comment: Comment: GATK4.3 ApplyBQSR
7 months ago by raphael.B ▴ 460
0
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1
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724
views
Comment: Comment: AF=NA in gnomad vcf
updated 9 months ago by 40k • written 9 months ago by ▴ 460
1
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1
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724
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Answer: Answer: AF=NA in gnomad vcf
updated 9 months ago by 40k • written 9 months ago by ▴ 460
1
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0
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566
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Answer: Answer: STAR Aligment
10 months ago by raphael.B ▴ 460
0
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0
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566
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Comment: Comment: STAR Aligment
10 months ago by raphael.B ▴ 460
0
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0
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1.2k
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Answer: Answer: Count missing and non missing values in a VCF file
11 months ago by raphael.B ▴ 460
1
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0
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697
views
Comment: Comment: Representation of variables in PCA
12 months ago by raphael.B ▴ 460
1
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1
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613
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Answer: Answer: bcftools merge doesn't recalculate AF
12 months ago by raphael.B ▴ 460
0
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0
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653
views
Answer: Answer: How to check the quality of VCF file for GWAS analysis
13 months ago by raphael.B ▴ 460
1
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1
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470
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Answer: Answer: Count all variants from vcf file
13 months ago by raphael.B ▴ 460
1
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0
replies
542
views
Answer: Answer: BEDtools merge output
13 months ago by raphael.B ▴ 460
0
votes
1
reply
672
views
Comment: Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
14 months ago by raphael.B ▴ 460
0
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0
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992
views
Comment: Comment: Writing a function in R which will identify peaks within a data frame
14 months ago by raphael.B ▴ 460
3
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1
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707
views
Comment: Comment: A question about BED file and finding mutation in vcf file
14 months ago by raphael.B ▴ 460
1
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0
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653
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Comment: Comment: Snakemake wildcards overwriting one another
14 months ago by raphael.B ▴ 460
0
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1
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1.8k
views
Answer: Answer: How to Create a multi-sample VCF file
14 months ago by raphael.B ▴ 460
2
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1
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549
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Answer: Answer: Set random genotypes to missing in VCF file by individuals and sites
14 months ago by raphael.B ▴ 460
0
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0
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801
views
Comment: Comment: Find consecutive duplicate strings in rows from df
14 months ago by raphael.B ▴ 460
0
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1
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1.5k
views
Comment: Comment: Pass a python dictionary as a snakemake variable (input and output)
14 months ago by raphael.B ▴ 460
72 results • Page 1 of 2
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