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Answer: Answer: Bedfile format deeptools
2.8 years ago by Devon Ryan 104k
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918
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Comment: Comment: Methylome Data or DE Analysis
2.9 years ago by Devon Ryan 104k
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1.8k
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Comment: Comment: Inserting Gaps into FASTA files for Alignment to Reference
2.9 years ago by Devon Ryan 104k
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4.3k
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Comment: Comment: GC content in bilsulfite converted library
2.9 years ago by Devon Ryan 104k
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1
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12k
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Comment: Comment: ViennaRNA error: ImportError: No module named _RNA
2.9 years ago by Devon Ryan 104k
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1.3k
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Comment: Comment: Using RefSeq gene annotation file to determine gene lengths
3.0 years ago by Devon Ryan 104k
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1
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1.1k
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Comment: Comment: Bioinformatics Definitions
3.0 years ago by Devon Ryan 104k
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4.7k
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Comment: Comment: Installing samtools version 1.12
3.0 years ago by Devon Ryan 104k
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872
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Answer: Answer: Look at Different Locus in the Bam File
3.0 years ago by Devon Ryan 104k
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2.3k
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Answer: Answer: Remove prefix chrom:position before rsIDs
3.0 years ago by Devon Ryan 104k
4
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4.7k
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Answer: Answer: Installing samtools version 1.12
3.0 years ago by Devon Ryan 104k
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1.7k
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Comment: Comment: How much weights a million reads
3.0 years ago by Devon Ryan 104k
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3.8k
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Comment: Comment: When is recommended to remove or keep Unpaired "Orphan" reads in downstream anal
3.0 years ago by Devon Ryan 104k
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1
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1.4k
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Comment: Comment: Multi-factor Analysis in DeSEQ2
3.1 years ago by Devon Ryan 104k
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627
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Answer: Answer: Are [*.removed.sorted.bai] and [*.metrix.txt] needed for the next step?
3.1 years ago by Devon Ryan 104k
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2.8k
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Comment: Comment: deeptools 3.5 Segmentation fault:11
3.1 years ago by Devon Ryan 104k
4
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2.8k
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Answer: Answer: deeptools 3.5 Segmentation fault:11
3.1 years ago by Devon Ryan 104k
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1
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2.8k
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Comment: Comment: deeptools 3.5 Segmentation fault:11
3.1 years ago by Devon Ryan 104k
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2.8k
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Comment: Comment: deeptools 3.5 Segmentation fault:11
3.1 years ago by Devon Ryan 104k
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0
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739
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Comment: Comment: Performance metrics of aligners and variant callers
3.2 years ago by Devon Ryan 104k
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1
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4.2k
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Comment: Comment: Multiqc
3.2 years ago by Devon Ryan 104k
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2.9k
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Comment: Comment: Deeptools, ComputeMatrix and plotProfile
3.2 years ago by Devon Ryan 104k
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2
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2.9k
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Answer: Answer: Deeptools, ComputeMatrix and plotProfile
3.2 years ago by Devon Ryan 104k
1
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936
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Answer: Answer: calculate area under curve for profile plot (deepTools)
3.2 years ago by Devon Ryan 104k
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833
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Comment: Comment: Does GISAID fasta files contain spike protein or whole genome sequence?
3.2 years ago by Devon Ryan 104k
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3.8k
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Comment: Comment: DESeq2 multi-factor design
3.2 years ago by Devon Ryan 104k
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2.3k
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Comment: Comment: ATAC-Seq: Filter bams for differential analysis or not
3.2 years ago by Devon Ryan 104k
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1
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873
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Comment: Comment: Suggestion for modelling transcriptomics analysis
3.2 years ago by Devon Ryan 104k
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4.1k
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Comment: Comment: Converting beta value to M value (when beta=1)
3.2 years ago by Devon Ryan 104k
45
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23
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6.4k
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6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
chat slack
updated 16 months ago by 44k • written 6.2 years ago by 104k
1
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1.0k
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Answer: Answer: Can I control the exposure time as a batch effect?
3.2 years ago by Devon Ryan 104k
1
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1.4k
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Answer: A: If I want to learn bioinformatics as a computer scientist, would it help to lear
3.2 years ago by Devon Ryan 104k
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990
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Comment: C: Lmfit function, to analyse differential expressions, not coming from arrays
3.2 years ago by Devon Ryan 104k
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1.2k
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Comment: C: A layman trying to understand what a FASTA file is
3.2 years ago by Devon Ryan 104k
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7.4k
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Comment: C: Remove supplementary alignments from a bam file
3.3 years ago by Devon Ryan 104k
6
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8.0k
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Answer: A: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
3.3 years ago by Devon Ryan 104k
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8.0k
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Comment: C: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
3.3 years ago by Devon Ryan 104k
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8.0k
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Comment: C: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
3.3 years ago by Devon Ryan 104k
3
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0
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4.5k
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Comment: C: bamCoverage bin size for narrow and broad histone marks
3.3 years ago by Devon Ryan 104k
1
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7.6k
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Comment: C: The meaning of differentially expressed (DE) gene level
3.3 years ago by Devon Ryan 104k
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0
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900
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Comment: C: Calculating fold change...CONFUSION
3.3 years ago by Devon Ryan 104k
1
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1
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900
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Answer: A: Calculating fold change...CONFUSION
3.3 years ago by Devon Ryan 104k
2
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0
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57k
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Comment: C: How To Write Data In A Granges Object To A Bed File.
updated 3.4 years ago by 44k • written 10.5 years ago by 104k
34
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5
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57k
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Answer: A: How To Write Data In A Granges Object To A Bed File.
updated 3.4 years ago by 44k • written 10.5 years ago by 104k
1
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0
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3.1k
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Comment: C: What are those black lines in my heatmap?
3.4 years ago by Devon Ryan 104k
2
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1
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3.1k
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Answer: A: What are those black lines in my heatmap?
3.4 years ago by Devon Ryan 104k
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3.9k
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Comment: C: BigWig from ensembl assembly to UCSC session
3.4 years ago by Devon Ryan 104k
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1
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3.9k
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Comment: C: BigWig from ensembl assembly to UCSC session
3.4 years ago by Devon Ryan 104k
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0
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9.9k
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Comment: C: how is obtained the BED score values (the 5th column of the bed files) in BED fi
3.4 years ago by Devon Ryan 104k
1
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0
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5.7k
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Answer: A: error with vcfutils when building consensus sequence with samtools and bcftools
updated 3.4 years ago by 44k • written 9.3 years ago by 104k
10,041 results • Page 2 of 201
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