The Genome Assembly & Analysis Tool Box (GATB) provides an easy way to develop efficient and fast NGS tools. GATB is a C++ library of high level functions that leverage state-of-the-art data structures for handling huge NGS datasets.
To developers of NGS applications: GATB allows you to re-use components (fasta/fastq reading, k-mer counting, de Bruijn graph construction and traversal, minimizers) from Minia/DSK. It's well-documented.
We will answer Biostar questions regarding:
- Library usage
- Support for any of the tools
-- GATB authors