Question: FANTOM5 Promoter Atlas
gravatar for Aishwarya.Kulkarni
6.0 years ago by
United States
Aishwarya.Kulkarni30 wrote:

Hi All,

I went through this paper on promoter atlas in FANTOM5Ā , my question is that do they have cell wise CAGE dataset or is it global , as I cannot see the cell wise CAGE expression on their website.

Thanks in advance.

promotor atlas fantom5 • 2.9k views
ADD COMMENTlink modified 5.5 years ago by R. Taylor Raborn290 • written 6.0 years ago by Aishwarya.Kulkarni30
gravatar for R. Taylor Raborn
5.5 years ago by
Tempe, AZ | Biodesign Institute at ASU
R. Taylor Raborn290 wrote:


Are you asking if they have cell-line/cell-type specific data to view? The answer is yes. A link to their ZENBU genome browser can be found here; you can add/remove certain datasets as tracks. While ZENBU works fine, for my use cases I prefer to use IGV for various reasons, including its flexibility. For example, you can load datasets on custom servers (ie iPlant Atmosphere) and it has integration with bedtools as well.

Hope this helps,


ADD COMMENTlink modified 7 months ago by RamRS27k • written 5.5 years ago by R. Taylor Raborn290
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