I want a file that has all the SNPs discovered by the 1000 genomes project, with their location and major/minor allele genotype and frequency. I need this in order to determine the haplotype of my sequences.
So far, I've looked at 1000 genomes project's Data Slicer (http://www.1000genomes.org/data-slicer) and the UCSC Genome Browser (http://genome.ucsc.edu/cgi-bin/hgTables), but I can't figure out how to get such a file. Could someone with experience with this please help me? Thanks!