Question: Querying the 3' UTR region of Ensembl using Python
gravatar for jacksparrow
5.6 years ago by
United Kingdom
jacksparrow0 wrote:

I'm kinda new to biopython and I was wondering If I had sequences(s) in fasta format on my computer, is it possible to use python to search for exact matches on ensembl in the 3' UTR region?

Any help would be appreciated.

sequence • 1.7k views
ADD COMMENTlink modified 5.6 years ago by Devon Ryan93k • written 5.6 years ago by jacksparrow0
gravatar for Devon Ryan
5.6 years ago by
Devon Ryan93k
Freiburg, Germany
Devon Ryan93k wrote:

It might be easier to manually get the 3' UTR sequence from Biomart and then use that with biopython (perhaps there are biopython functions to query biomart, but I'm not familiar with them). The exact matching can be done as in this tutorial example.

ADD COMMENTlink written 5.6 years ago by Devon Ryan93k

I'm sorta looking for a direct way rather than taking the longer route.

Thanks for the tutorial.

ADD REPLYlink written 5.6 years ago by jacksparrow0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1507 users visited in the last hour