Question: LocusZoom used in different species
0
gravatar for dengjie
4.8 years ago by
dengjie0
China
dengjie0 wrote:

Hello everyone, it is my first time to be here.I am doing GWAS in ovine,is anyone could tell me whether the LocusZoom could be used in ovine? Is there any software could do similar analysis as LocusZoom in ovine? Thankyou very much  

snp genome • 989 views
ADD COMMENTlink modified 4.8 years ago by Sukhdeep Singh9.7k • written 4.8 years ago by dengjie0
0
gravatar for Sukhdeep Singh
4.8 years ago by
Sukhdeep Singh9.7k
Netherlands
Sukhdeep Singh9.7k wrote:

You can create custom db, pull the files from UCSC ftp for oviAri3

ftp://hgdownload.cse.ucsc.edu/goldenPath/oviAri3/
and then use the script provided here.

http://genome.sph.umich.edu/wiki/LocusZoom_Standalone#Creating_a_custom_SQLite_database

ADD COMMENTlink written 4.8 years ago by Sukhdeep Singh9.7k

Thank you very much! I will have a try^_^

ADD REPLYlink written 4.8 years ago by dengjie0

I have tried to install the softwares, unluckily, the LocusZoom could just be installed in Linux system, I am not sure which version of it could be installed, centos?or Ubun? or some others? Thanks

ADD REPLYlink written 4.8 years ago by dengjie0

In that case, best is to talk with the authors.

ADD REPLYlink written 4.8 years ago by Sukhdeep Singh9.7k
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