Question

LocusZoom used in different species

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9.8 years ago

dengjie • 0

Hello everyone, it is my first time to be here.I am doing GWAS in ovine,is anyone could tell me whether the LocusZoom could be used in ovine? Is there any software could do similar analysis as LocusZoom in ovine? Thankyou very much

genome SNP • 2.2k views

ADD COMMENT • link updated 2.5 years ago by Ram 43k • written 9.8 years ago by dengjie • 0

Ram · Answer 1 · 2014-07-03

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9.8 years ago

Sukhi Singh 11k

You can create custom db, pull the files from UCSC ftp for oviAri3 and then use the script provided here.

ADD COMMENT • link updated 2.5 years ago by Ram 43k • written 9.8 years ago by Sukhi Singh 11k

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Thank you very much! I will have a try ^_^

ADD REPLY • link updated 2.5 years ago by Ram 43k • written 9.8 years ago by dengjie • 0

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I have tried to install the softwares, unluckily, the LocusZoom could just be installed in Linux system, I am not sure which version of it could be installed, centos?or Ubun? or some others? Thanks

ADD REPLY • link updated 2.5 years ago by Ram 43k • written 9.8 years ago by dengjie • 0

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In that case, best is to talk with the authors.

ADD REPLY • link updated 2.5 years ago by Ram 43k • written 9.8 years ago by Sukhi Singh 11k