Question: What program can I use for multi-layered presentation of a biological network?
0
gravatar for dkarolid18
4.9 years ago by
dkarolid180
Germany
dkarolid180 wrote:

I have created a small database in Ecxel and I want to represent it as a network. I have been using Biolayout 3d but I really want to demonstrate the interactions through different layers, because my database includes interactions between genes, proteins, types of radiation, strains, dose rates and others... I have tried to download a program called Arena 3d but it doesn't work. Any ideas?? Thank you!

gene • 1.2k views
ADD COMMENTlink modified 4.1 years ago by thorerges60 • written 4.9 years ago by dkarolid180
2

enter image description here

 

ADD REPLYlink modified 4.9 years ago • written 4.9 years ago by Pierre Lindenbaum120k

Thank you for the responce, but I don't think R will help me with create a 3-D network visualization... I already have R studio and use it for cross-checking databases....

 

ADD REPLYlink written 4.9 years ago by dkarolid180
1
gravatar for thorerges
4.1 years ago by
thorerges60
United States
thorerges60 wrote:

I think you should take a look at Cytoscape. It is the most staightforward to use. 

ADD COMMENTlink written 4.1 years ago by thorerges60
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 817 users visited in the last hour