Question: What program can I use for multi-layered presentation of a biological network?
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gravatar for dkarolid18
5.9 years ago by
dkarolid180
Germany
dkarolid180 wrote:

I have created a small database in Ecxel and I want to represent it as a network. I have been using Biolayout 3d but I really want to demonstrate the interactions through different layers, because my database includes interactions between genes, proteins, types of radiation, strains, dose rates and others... I have tried to download a program called Arena 3d but it doesn't work. Any ideas?? Thank you!

gene • 1.4k views
ADD COMMENTlink modified 5.1 years ago by thorerges70 • written 5.9 years ago by dkarolid180
2

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ADD REPLYlink modified 5.9 years ago • written 5.9 years ago by Pierre Lindenbaum128k

Thank you for the responce, but I don't think R will help me with create a 3-D network visualization... I already have R studio and use it for cross-checking databases....

 

ADD REPLYlink written 5.9 years ago by dkarolid180
1
gravatar for thorerges
5.1 years ago by
thorerges70
United States
thorerges70 wrote:

I think you should take a look at Cytoscape. It is the most staightforward to use. 

ADD COMMENTlink written 5.1 years ago by thorerges70
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