Question: How to convert the Peakzilla TSV output to the BED format expected by Homer
gravatar for Mohit
5.9 years ago by
Mohit0 wrote:

Hello friends,

After performing the Peakzilla peak caller, I got .tsv output.. I want to visualize this output using the Homer to get motif. so it must be in bed  . 

Can any one tell me how to convert .tsv to .bed?

chip-seq • 2.6k views
ADD COMMENTlink modified 5.9 years ago • written 5.9 years ago by Mohit0

The tsv file might already be in BED format, which is just a special case of tsv. Show a few lines and it should be apparent what reformatting is needed.

ADD REPLYlink written 5.9 years ago by Devon Ryan95k

Devon Ryan,

yeah I found it similar to BED file format. I able to fix this problem.

Thanking you for consideration and time!


ADD REPLYlink written 5.9 years ago by Mohit0
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