I am a newbie in Genome sequencing and I'm trying to run the available softwares to recognize CNV.
I have data from a lab (.bam files and .bed files). The issue is that the software that I have tried (CONTRA, EXCAVATOR, etc) require test and control samples (.bam files).
My ideia is that the control samples are fine and don't have any variations. Is that it? How can I get those files?
Thanks you very much for your time.