Question: Methylation Data Peak Calling
gravatar for Coby Viner
6.4 years ago by
Coby Viner40
Coby Viner40 wrote:

I am currently working with some low resolution (DIP-based, as opposed to chemically-based) methylation data. I would like to employ peak calling to extract methylated regions of high confidence. 


I realize that ChIP-Seq peak callers could be used for this, but would prefer one designed for this kind of data. The only software that I am aware of which does this is BALM. Does anyone know of any other good methylation peak calling software that is well-suited for this purpose?

ADD COMMENTlink modified 11 months ago by Shicheng Guo8.5k • written 6.4 years ago by Coby Viner40

MACS2 is the best choice.

ADD REPLYlink written 11 months ago by Shicheng Guo8.5k
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