How to download reference transcriptome file of species ?
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7.0 years ago
jack ▴ 870

Hi,

 

I'm looking for database to download reference transcriptome of different species . Does someone have  a recommendation?

RNA-Seq Assembly genome rna-seq • 5.4k views
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7.0 years ago
David Fredman ★ 1.1k

Duplicate of Looking for database to download transcriptom annotation file ?

You can get reference gene annotation from NCBI, Ensembl, UCSC, and iGenome amongst others.

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2.8 years ago

You can use the NCBI web interface. Search for sequences of the species you want and add "biomol_rna[PROP]" to the filters. In the top-right corner above the results click on: Send To > File > Format: Fasta (or other format like GFF) > Create File.

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23 months ago

I would recommend going to NCBI and using their reference transcriptome - https://www.ncbi.nlm.nih.gov/genome/?term=drosophila%20melanogaster%20transcriptome

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