Question: How to download reference transcriptome file of species ?
gravatar for jack
6.0 years ago by
jack810 wrote:



I'm looking for database to download reference transcriptome of different species . Does someone have  a recommendation?

rna-seq assembly genome • 4.3k views
ADD COMMENTlink modified 11 months ago by ashmc0 • written 6.0 years ago by jack810
gravatar for David Fredman
6.0 years ago by
David Fredman1.0k
University of Bergen, Norway
David Fredman1.0k wrote:

Duplicate of Looking for database to download transcriptom annotation file ?

You can get reference gene annotation from NCBI, Ensembl, UCSC, and iGenome amongst others.

ADD COMMENTlink written 6.0 years ago by David Fredman1.0k
gravatar for Pitágoras Alves
22 months ago by
Brazil, Natal, UFRN
Pitágoras Alves0 wrote:

You can use the NCBI web interface. Search for sequences of the species you want and add "biomol_rna[PROP]" to the filters. In the top-right corner above the results click on: Send To > File > Format: Fasta (or other format like GFF) > Create File.

ADD COMMENTlink written 22 months ago by Pitágoras Alves0
gravatar for ashmc
11 months ago by
ashmc0 wrote:

I would recommend going to NCBI and using their reference transcriptome -

ADD COMMENTlink written 11 months ago by ashmc0
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