This is my first time with Illumina datasets and I'm stuck near loading data. My files are in . bgx and .txt format and they are not being read in limma, lumi and beadarray in R-v 3.1.1. It shows errors as follows both file types:
Error in gregexpr("\t", dataLine1)[] : subscript out of bounds
Error in readGenericHeader(fname, columns = expr, sep = sep) :
Specified column headings not found in file
Would really appreciate your help.
Thanks in advance!
PS: link to the txt file