Question: How to find positions of splice sites?
0
gravatar for Artem Kiselev
5.2 years ago by
Russian Federation
Artem Kiselev20 wrote:

I want to find positions of splice sites for a particular human gene. How and where can I find them? And what is the best way to find them for not-human not-model organisms?

splicing • 2.0k views
ADD COMMENTlink modified 5.2 years ago by Devon Ryan92k • written 5.2 years ago by Artem Kiselev20
1
gravatar for Devon Ryan
5.2 years ago by
Devon Ryan92k
Freiburg, Germany
Devon Ryan92k wrote:

The simplest method would be to just download that gene's annotation from biomart (obviously, these may not be complete). For a non-model organism, without doing some wet-bench experiments, you're left with looking at whatever genomic/transcriptomic information is available for it.

ADD COMMENTlink written 5.2 years ago by Devon Ryan92k

I could not find in the biomart database splice site for the spicies, which I was looking for.

In result I found this article, http://nar.oxfordjournals.org/content/28/21/4364.full will keep reading.

ADD REPLYlink modified 5.2 years ago • written 5.2 years ago by Artem Kiselev20
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