I have a edgeR results table linked to sample expected count values, but a question confused me a lot. Someone please just give me a simple explanation of how the number under A1, A2, A3, B1, B2 and B3 relate to the raw read numbers? For this given gene, the expect count may be (0,0,0 vs 5.7, 2.31,1.24) and the fold change is 1444.89x and the FDR is extreme small. Do I trust this? Thanks a lot!
Here is the example,
id Accession Version Fold change logFC FDR A1 A2 A3 B1 B2 B3 c78690_g3_i1 XP_007258149.1 1444.89 10.50 2.05E-16 0 0 0 5.7 2.31 1.24