Question: How to computationally predict DNA sequences that contain no gene or miRNA?
gravatar for Avro
6.3 years ago by
Avro150 wrote:

Hi everyone,

I am working with sequences that have no annotated genes or miRNA. I suspect that they might have functionality (i.e. non-coding DNA such as binding sites, CpG...). I was wondering if someone could please suggest me some prediction algorithms/software? Is there a database/atlas of such annotations? I would like to use computational approaches to identify potential regions that I would then validate experimentally. My research is hybrid.

Thank you!




prediction • 1.6k views
ADD COMMENTlink modified 6.3 years ago by Khader Shameer18k • written 6.3 years ago by Avro150
gravatar for Khader Shameer
6.3 years ago by
Manhattan, NY
Khader Shameer18k wrote:

You can parse this information gene or transcript biotype labels from Ensembl. 

See the details here 

ADD COMMENTlink written 6.3 years ago by Khader Shameer18k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2160 users visited in the last hour