How to computationally predict DNA sequences that contain no gene or miRNA?
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7.0 years ago
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Hi everyone,

I am working with sequences that have no annotated genes or miRNA. I suspect that they might have functionality (i.e. non-coding DNA such as binding sites, CpG...). I was wondering if someone could please suggest me some prediction algorithms/software? Is there a database/atlas of such annotations? I would like to use computational approaches to identify potential regions that I would then validate experimentally. My research is hybrid.

Thank you!

 

 

 

prediction • 1.7k views
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7.0 years ago

You can parse this information gene or transcript biotype labels from Ensembl. 

See the details here 

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