Question: How to computationally predict DNA sequences that contain no gene or miRNA?
0
gravatar for Avro
5.2 years ago by
Avro140
Canada
Avro140 wrote:

Hi everyone,

I am working with sequences that have no annotated genes or miRNA. I suspect that they might have functionality (i.e. non-coding DNA such as binding sites, CpG...). I was wondering if someone could please suggest me some prediction algorithms/software? Is there a database/atlas of such annotations? I would like to use computational approaches to identify potential regions that I would then validate experimentally. My research is hybrid.

Thank you!

 

 

 

prediction • 1.5k views
ADD COMMENTlink modified 5.2 years ago by Khader Shameer18k • written 5.2 years ago by Avro140
0
gravatar for Khader Shameer
5.2 years ago by
Manhattan, NY
Khader Shameer18k wrote:

You can parse this information gene or transcript biotype labels from Ensembl. 

See the details here 

ADD COMMENTlink written 5.2 years ago by Khader Shameer18k
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