How to computationally predict DNA sequences that contain no gene or miRNA?

Question

[Avro]

Hi everyone,

I am working with sequences that have no annotated genes or miRNA. I suspect that they might have functionality (i.e. non-coding DNA such as binding sites, CpG...). I was wondering if someone could please suggest me some prediction algorithms/software? Is there a database/atlas of such annotations? I would like to use computational approaches to identify potential regions that I would then validate experimentally. My research is hybrid.

Thank you!

Answer 1

[Khader Shameer]

You can parse this information gene or transcript biotype labels from Ensembl.

See the details here.