Question: ANIb versus ANIm
0
gravatar for njs531
2.7 years ago by
njs53120
United Kingdom
njs53120 wrote:

Hi,

I'm conducting a research to explore bacterial diversity using R. leguminorarum population as a model. I'm using Average nucleotide identity (ANI) analysis to delineate the species in this population. I'm not too sure whether to use ANIb or ANIm so I have chosen ANIb which is the default option. I've read that ANIm is used to decrease the running time . Besides that, is there a significant difference between the two parameters  and  is my result going to be less accurate if I use ANIb instead of ANIm ?

ADD COMMENTlink modified 2.7 years ago by cts1.5k • written 2.7 years ago by njs53120
0
gravatar for cts
2.7 years ago by
cts1.5k
Pasadena
cts1.5k wrote:

check out this paper for a comparison of the two methods as well as a third way of performing these calculations using tetranucleotide frequencies.

ADD COMMENTlink written 2.7 years ago by cts1.5k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 736 users visited in the last hour