I need to do assembly of Illumina mate-pair reads (from bacterial sample) using SPAdes, and I'm thinking to use public Galaxy server so that I won't need to install SPAdes myself. However, when I used the only public Galaxy server where I can find SPAdes, it gave an error:
== Error == you should specify at least one paired-end or unpaired library (only mate-pairs libraries were found)!
After searching in SPAdes website, I concluded that the error came since the SPAdes version that I used in the public server was 3.0.0, while the manual states that "SPAdes should not be used if only mate-pairs [...] are available."
A manual of a later SPAdes version (3.1.0) indicates that now it "supports mate-pair only assembly". So, I wonder if anyone is aware of a public Galaxy server which has SPAdes 3.1.0. Or else, is it possible to do something with my mate-pair data so that it can run with SPAdes 3.0.0?
Thank you very much for your help.