We want to evaluate the association of several SNPs in an population with a disease. After the bech work we have a database with the results. We use the software PLINK to run logistic regression analysis including covariates like the sex of the patientcs. The output file give me several p-values :
My questions is: Which p-value give me the association between the SNP and the disease? which p-value reflect the effect of the covariate?