hi every one,
what i need to do is i need multiple sequence alignment file
i converted the vcf file to consensus fasta and cat all these consensus sequence into multifasta.
in my cat file seq are >1......>10000 for a.fasta and >1......>10000 for b.fasta when i use clustal w it gives error that sequence have same header THAT MAKES SENSE so what i am planning to do is to convert >1......>10000 to >1
and >1......>10000 for b.fasta to >2 and same for for all my 5 samples
guide me with command to do that
please do suggest any help