What are the suitable packages for GO and GSEA to put inside of pipeline ?
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8.4 years ago
jack ▴ 960

Hi all,

I'm developing pipeline. in one part of my pipeline, I want to do GO and GSEA for the DE genes.

Could you please give me the name of some good GO and GSEA analysis package which I can use them easily inside of my pipeline?

RNA-Seq genome software-error R • 2.2k views
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8.4 years ago
EagleEye 7.4k

Check this out. you can integrate this in any pipeline.

Gene Set Clustering based on Functional annotation (GeneSCF)

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