How to download Gene annotations.gtf file for Drosophila melanogaster
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8.0 years ago
jack ▴ 940

Hi all,

I'm trying to download the genome and transcriptom annotation in GTF file format for the Drosophila melanogaster. I tried the Ensemble website, but I got lost.

Would someone help me to get those annotation files ?

genomics alignment RNA-Seq next-gen • 14k views
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8.0 years ago
Manvendra Singh ★ 2.2k

You could also go to UCSC table browser

Make sure that you have clicked

  • Clade : Insect
  • Genome : D.melanogaster
  • Assembly : select the one you want your GTF from
  • Group : Genes and Genes prediction
  • Track : select the one you want your GTF from, they have flybase, refseq, ensembl etc
  • Table : select the one you want your GTF from
  • Output format : gtf

and just get output.

HTH

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