How to download Gene annotations.gtf file for Drosophila melanogaster
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7.3 years ago
jack ▴ 920

Hi all,

 

I'm trying to download the genome and transcriptom  annotation  in GTF file format for the Drosophila melanogaster. I tried the Ensemble website, but I got lost.

Would someone help me to get those annotation files ?

bioinformatics next-gen genomics RNA-Seq alignment • 13k views
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7.3 years ago
Manvendra Singh ★ 2.2k

You could also go to UCSC table browser

https://genome.ucsc.edu/cgi-bin/hgTables?command=start

make sure that you have clicked 

Clade : Insect

Genome : D.melanogaster

Assembly : "select the one you want your GTF from"

Group : Genes and Genes prediction

Track : "select the one you want your GTF from, they have flybase, refseq, ensembl etc etc"

Table : "select the one you want your GTF from"

Output format : gtf

and just get output.

 

HTH

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