Where can I download JASPAR_CORE_2014.meme or similar?
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9.6 years ago
a1ultima ▴ 840

I wish to run TOMTOM locally to see whether any of my DNA motifs match to those in the JASPAR_CORE_2014 database.

To run TOMTOM locally you need to provide it with a .meme file that represents your query motifs, and a .meme file that represents the database (<target file>) you wish to search against:

USAGE: tomtom [options] <query file> <target file>+

I wish to know where I can find .meme files of target databases I am interested in, for example JASPAR_CORE_2014.meme.

transcriptionfactor database meme dna-motif • 2.7k views
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Entering edit mode
9.6 years ago
a1ultima ▴ 840

I finally found the download link for all .meme format databases up to date: http://ebi.edu.au/ftp/software/MEME/Databases/motifs/motif_databases.12.1.tgz

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link is outdated. MEME-Suite provides file names here but not a link to download them http://meme-suite.org/db/motifs To download files, go here: http://meme-suite.org/doc/download.html?man_type=web

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