Where can I find SNPs for HLA ?

Question

[crivenster]

Where can I find SNP's for HLA sequences? The IMGT,EBI and hla.alleles.org host only the allele sequences. And I am also looking for variants for the hla alleles. Is there any database that holds the variant positions and variants for HLA allele sequences?

Answer 1

[Pierre Lindenbaum]

using the gene list on hla.alleles.org

http://www.ncbi.nlm.nih.gov/snp?cmd=search&term=%28%22HLA-A%22[Gene+Name]+OR+%22HLA-B%22[Gene+Name]+OR+%22HLA-C%22[Gene+Name]+OR+%22HLA-E%22[Gene+Name]+OR+%22HLA-F%22[Gene+Name]+OR+%22HLA-G%22[Gene+Name]+OR+%22HLA-H%22[Gene+Name]+OR+%22HLA-J%22[Gene+Name]+OR+%22HLA-K%22[Gene+Name]+OR+%22HLA-L%22[Gene+Name]+OR+%22HLA-N%22[Gene+Name]+OR+%22HLA-P%22[Gene+Name]+OR+%22HLA-S%22[Gene+Name]+OR+%22HLA-T%22[Gene+Name]+OR+%22HLA-U%22[Gene+Name]+OR+%22HLA-V%22[Gene+Name]+OR+%22HLA-W%22[Gene+Name]+OR+%22HLA-X%22[Gene+Name]+OR+%22HLA-Y%22[Gene+Name]+OR+%22HLA-Z%22[Gene+Name]+OR+%22HLA-DRA%22[Gene+Name]+OR+%22HLA-DRB1%22[Gene+Name]+OR+%22HLA-DRB2%22[Gene+Name]+OR+%22HLA-DRB3%22[Gene+Name]+OR+%22HLA-DRB4%22[Gene+Name]+OR+%22HLA-DRB5%22[Gene+Name]+OR+%22HLA-DRB6%22[Gene+Name]+OR+%22HLA-DRB7%22[Gene+Name]+OR+%22HLA-DRB8%22[Gene+Name]+OR+%22HLA-DRB9%22[Gene+Name]+OR+%22HLA-DQA1%22[Gene+Name]+OR+%22HLA-DQB1%22[Gene+Name]+OR+%22HLA-DQA2%22[Gene+Name]+OR+%22HLA-DQB2%22[Gene+Name]+OR+%22HLA-DQB3%22[Gene+Name]+OR+%22HLA-DOA%22[Gene+Name]+OR+%22HLA-DOB%22[Gene+Name]+OR+%22HLA-DMA%22[Gene+Name]+OR+%22HLA-DMB%22[Gene+Name]+OR+%22HLA-DPA1%22[Gene+Name]+OR+%22HLA-DPB1%22[Gene+Name]+OR+%22HLA-DPA2%22[Gene+Name]+OR+%22HLA-DPB2%22[Gene+Name]+OR+%22HLA-DPA3%22[Gene+Name]+OR+%22TAP1%22[Gene+Name]+OR+%22TAP2%22[Gene+Name]+OR+%22PSMB9%22[Gene+Name]+OR+%22PSMB8%22[Gene+Name]+OR+%22MICA%22[Gene+Name]+OR+%22MICB%22[Gene+Name]+OR+%22MICC%22[Gene+Name]+OR+%22MICD%22[Gene+Name]+OR+%22MICE%22[Gene+Name]%29