I am comparing two platforms for our analysis, the illumine NextSeq 500 and MiSeq.
Discard of sequencing the whole genome, the price seems to be the same for the two instruments.
The advantage of Miseq is that it can get the 2x300 READS while NextSeq is 150bp.
However, the NextSeq uses a new dying system for the flow cell that it can generate more data for specific target.
What I want to know is that is there any disadvantages of Nextseq compared to Miseq?