Question: Local Galaxy : tbl2asn_23_7 installation fails (python error)
gravatar for mokona__modoki
5.0 years ago by
mokona__modoki0 wrote:

Hi all,

I hope someone can help me deal with  my problem : I am currently customizing a local version of the Galaxy platform on my computer and I'd like to install Prokka (maintained by CRS4) everything works pretty well until Galaxy tries to install the tbl2asn_23_7 package, a dependency owned by takadonet. I have the following error and i must say I've tried quite a lot of things to solve the issue but it did not work:

File "/home/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/", line 110, in install_and_build_package_via_fabric

tool_dependency = self.install_and_build_package( app, tool_shed_repository, tool_dependency, actions_dict )
File "/home/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/", line 79, in install_and_build_package
current_dir = os.path.abspath( os.path.join( work_dir, dir ) )
File "/usr/lib/python2.7/", line 66, in join
if b.startswith('/'):

'NoneType' object has no attribute 'startswith'

It looks like a python error but there is probably another problem somewhere.

Any ideas ?

Thanks a lot

tbl2asn dependency python galaxy • 1.2k views
ADD COMMENTlink modified 5.0 years ago by Biostar ♦♦ 20 • written 5.0 years ago by mokona__modoki0
gravatar for Istvan Albert
5.0 years ago by
Istvan Albert ♦♦ 81k
University Park, USA
Istvan Albert ♦♦ 81k wrote:

You should post this on the Galaxy server:

PS: on the new version of Biostar moderators will be able to "migrate" a post to another biostar instance if that serves the right community

ADD COMMENTlink modified 5.0 years ago • written 5.0 years ago by Istvan Albert ♦♦ 81k

Thanks for your answer i'll do that :)

ADD REPLYlink written 5.0 years ago by mokona__modoki0
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