for each point (control and treatment), I have two more biological replicates, like ,control: A0,A3,A6, treatment:A1,A4,A7. After normalized with RPKM, I got a set of data with log2(A10/A0), P-value, FDR; log2(A4/A3), P-value, FDR; and log2(A7/A6), P-value, FDR. After that, I found common genes which consistently expressed in three replicates. That is main aim I want to extract. OK, the problem is for these common gene, they have three set of data, how can I assemble to one set?
Thanks a million.