I’m working on plotting gene orders of two organisms using genoPlotR in R. I have my data downloaded from Nucleotide NCBI database in gb format. My data plots perfectly, however, names of genes appear to be crammed up, and I did not really find a way to make space between them or expand size of segment.
my code is the following:
ann_twelve<-annotation(x1=middle(twelve), text=twelve$name, rot = 30) ann_thirteen<-annotation(x1=middle(thirteen), text=thirteen$name, rot = 30)
plot_gene_map(dna_segs=list(twelve,thirteen),comparisons= list(out144),annotations=list(ann_twelve, ann_thirteen), annotation_height=0.8, gene_type="side_blocks",dna_seg_scale=TRUE,scale=FALSE, dna_seg_labels=c("twelve","thirteen"))
I have been trying different ways to modify segment size on the plotting code, but was not successful.
Here is how my plotted data looks like: