Entering edit mode
9.4 years ago
ali
•
0
I have a vcf compressed and indexed (.vcf.gz and .tbi)
I have a list of sites that I need to remove from this file (delete forever) while having the other information.
Eg:
chr8 pos:125907085:125907085
what would be the best way to go about this?
is there a more optimal way of achieving this, lets say i have like 100 positions to remove
eg:
chr1 start-end
chr8 start-end
See bedtools intersect