It is a very basic question regarding the -db option. I am using standalone blast+ and I want to blast my query.fasta ONLY against specific organism (e.g human) protein database only. I know blasting against refseq_protein/ swissprot are the usual choice
I am confused which database to select from ftp://ftp.ncbi.nlm.nih.gov/blast/db/ .
How can I specify the specific organism in command line.