Trinity -denovo transcriptome combined assembly using Illumina and 454 data

Question

[malarvizhi.a]

How to use trinity to perform denovo transcriptome assembly using illumina and 454 data. Please share your comments.

[Istvan Albert]

you should expand your question - the simple answer is to read the manual

Answer 1

[malarvizhi.a]

Hi Istvan Albert,

Thank your suggestion. I was reading Trinity manual and found following command.

--single <string>   :single reads, one or more (note, if single file contains pairs, can use flag: --run_as_paired )

Once I have tried it. I will share my comments regarding this soon.