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• gene architecture and visualization
  hello  do anyone know how i can load an image for my profile in biostar site?  
• dist.dna in ape package proportion of invariant sites
  Hi, I know there is a way to include a gamma (G) parameter in the dist.dna() function in R [gamm...
• SNPs location in DNase I hypersensitive sites, whether its in the middle or tail of DHS sites
  Hi, could anyone tell me a easy way to know the location of SNPs in terms of the DHS sites? I wou...
• How To Find Mirna Binding Site Coordinates In Isoforms?
  Hi all, I'm looking for the web server or software to find the miRNA binding site cordinates on...
• For eCLIP-seq and iCLIP-seq, should I use the left or center position of the peaks as the binding site?
  I want to know the accurate (single nucleotide resolution) binding sites in eCLIP-seq experiment....
• How To Know Which Is The Start Codon And Stop Codon For A Gene Sequence?
  Hi Friends, I have a sequence and want to know the start site and the stop site in that particu...
• How to find the gene that a site of mouse genome belongs to?
  I have the genome data of mouse which downloaded from UCSC, but I don't know which gene the site ...
• Identifying sites under positive selection using the BEB method
  Hello! I ran codeml branch-site test (null and alternate) on 2118 genes and found that 42 of thes...
• Codeml: which substitutions occured in significative sites?
   Hello everyone, I used the branch-site method to detect positive selection in a linea with code...
• What tools can use to find RNA modification sites?
  Hi i'm trying to predict modified ribonucleotides  sites under stress condition bioinformaticly a...
• How To Calculate The Number Of Potential Synonymous And Nonsynonynous Sites
  Hi everyone, Does anyone know how to calculate the number of synonymous sites for a certain sequ...
• How To Get Non-Snp Sites Or Invariant Sites Based On 1000 Genomes Project
  Hi everyone, I need to find the human genomic sites which are invariant among all the individuals...
• translate position in cds to position in nucleotide sequence
  Hi everyone, I have some important sites it my protein sequence. I need to know the position of ...
• number of transcription factor binding sites
  Hi all! I use MEME to predict the transcription factor binding site, and it gives me a exact spe...
• Ensembl biomart attribute for number of synonymous vs. non-synonymou sites
  I am trying to obtain the number of synonymous and non-synonymous sites for a gene. I know that e...
• Histone Modification Database For Positive And Negative
  Hi, I want to know the sites for Histone modification (let's say H3K36me3) and also the site whi...
• Are there downloadable DBs for hotspot mutations?
  I want to know whether detected variants are hotspot mutations in TCGA or not. Though cBioportal...
• ChIP-Seq alignment with random site for duplicated
  Dear all,   I want to align my ChIP-Seq samples but with two strategies: Align the fastq.gz ...
• Need Information About Human Tfs Indentified By The Encode Project
  Hello everybody, I want to know if all binding sites of identified human transcription factors h...