Entering edit mode
8.2 years ago
jack ▴ 960
I have ranked list of small RNA interactions called A. also I have other set small RNAs interactions called B.
I want to see that, whether the set B enriched in top or down of ranked list A? So I need to have plot based on P-value. because these interactions are not genes and does not have standard IDs which most of the gene set enrichment analysis tool need, I can not use them. Does someone knows how can I compute it ?
Here is an example of my dataset :
Ranked list A:
"CENPT-MIMAT0000077" "WDR43-MIMAT0000068" "P4HA2-MIMAT0000082" "NONO-MIMAT0000086" "CNOT2-MIMAT0000086" "CREB3L1-MIMAT0000081" "PLA2G6-MIMAT0000077" "LIG1-MIMAT0000077" "IFT46-MIMAT0000076"
set B :
CREB3L1-MIMAT0000081" "PLA2G6-MIMAT0000077" "LIG1-MIMAT0000077"
I need the result as plot with p-values
the problem is that, I have one ranked list, without any class information. I want to compute the enrichment of B in ranked list A. but the one you suggested, it need more inputes