Tool: RNA secondary structure prediction
gravatar for kaur.devbio
5.6 years ago by
kaur.devbio0 wrote:


Can anyone tell a tool which could predict the secondary structure of RNA which also take  pseudouridine pairing with adenine or any nucleotide  (A~ѱ, N- ѱ) in account.

rna-seq tool • 1.7k views
ADD COMMENTlink modified 5.6 years ago by Charles Warden7.8k • written 5.6 years ago by kaur.devbio0
gravatar for Charles Warden
5.6 years ago by
Charles Warden7.8k
Duarte, CA
Charles Warden7.8k wrote:

I don't know, but I would probably start by contacting the developers for the most popular RNA secondary structure prediction tools.  If this is a common request, maybe it is taken into consideration in the latest version of their program.

If it helps, I believe these are the most commonly used tools:

Alternatively, you can check if the same group has developed a different program that might address this issue (for example, I believe the developers of Mfold actually consider UNAfold to be a better option, but I don't recall why).

ADD COMMENTlink written 5.6 years ago by Charles Warden7.8k

Thanks for writing Charles Warden,

I already mailed to the developers of RNAfold as well as Mfold regarding the same issue bust still waiting for their response.

ADD REPLYlink written 5.6 years ago by kaur.devbio0
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