Tutorial:Video: ChIP-Seq Analysis and Visualization using Galaxy and IGB.
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7.4 years ago
Nowlan Freese ▴ 860

"Focus on a Feature: ChIP-Seq Analysis and Visualization using Galaxy and IGB."

This Focus on a Feature has finished. You can find the recording here:

https://www.youtube.com/watch?v=HqnQKgJd254

To follow along, you can find the data I used in Galaxy here.

Previous Focus on a Feature recordings can be found here.

Program:

  1. Aligning ChIP-Seq data in Galaxy.
  2. Calling Peaks using MACS in Galaxy.
  3. Visualizing ChIP-Seq data in IGB.
  4. Comparative visualization with RNA-Seq data in IGB.

Integrated Genome Browser (IGB)

IGB provides an advanced, highly customizable environment for exploring and analyzing large-scale genomic data sets. Using IGB you can visually analyze RNA-Seq, ChIP-Seq, and many other genomic projects. The best part is that IGB can be used to produce publication quality images from genome scale data sets, and is provided FREE.

If you have questions or need assistance, contact us at:

Nowlan Freese nfreese@uncc.edu

Ann Loraine aloraine@uncc.edu

To download and start IGB, go to bioviz.org and select the "Download Now" link. Once IGB starts, choose Help / Tutorials for a quick introduction to IGB.

Please share this with students and colleagues

IGB ChIP-Seq Galaxy MACS RNA-Seq • 7.6k views
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