I wish you all enjoy this fantastic new year. I was recently trying out COGsoft (April 2012 release) to identify orthology in a bunch of proteomes. I precisely followed the instructions in the readme file, but when I was running COGlse, it says "Can't open input file ./data/tmp/_hash.tmp".
I figure that there is no such thing as tmp/ or _has.tmp throughout the procedures. So not sure why the program is looking for it. I wonder if anyone has met with this too? And how did you solve this? I appreciate any information.