COGsoft error can't open _hash.tmp
1
1
Entering edit mode
6.9 years ago
qiyunzhu ▴ 130

Dear community,

I wish you all enjoy this fantastic new year. I was recently trying out COGsoft (April 2012 release) to identify orthology in a bunch of proteomes. I precisely followed the instructions in the readme file, but when I was running COGlse, it says "Can't open input file ./data/tmp/_hash.tmp".

I figure that there is no such thing as tmp/ or _has.tmp throughout the procedures. So not sure why the program is looking for it. I wonder if anyone has met with this too? And how did you solve this? I appreciate any information.

Best regards,

cog blast orthology • 1.5k views
ADD COMMENT
0
Entering edit mode

I did not use COGlse so far, but using COGcognitor you have to create also an hash file. Maybe looking in the manual at the COGcognitor section could help you.
 

ADD REPLY
1
Entering edit mode
6.3 years ago
jk ▴ 10

You just need to make a new directory "./data/tmp/" in your working directory. The readme was a bad walkthrough.

ADD COMMENT

Login before adding your answer.

Traffic: 1486 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6