Question: Finding similar trees toplogy from a thousands of newick trees
0
gravatar for vicky
4.4 years ago by
vicky20
Germany
vicky20 wrote:

Hi All

 

I have a list of 2000 newick (format) unrooted phylogentic trees of 20 species. I want to find from these 2000 trees, how many topologies they favor and their number of trees associated with each toplogies.

E.g. ((A,B),C); --- 20 trees , ((B,C),A); ---  40 trees and so on.

Is there any program available to do this ?

 

Thanks

phylogenetic tree • 979 views
ADD COMMENTlink modified 2.4 years ago by Biostar ♦♦ 20 • written 4.4 years ago by vicky20
1
gravatar for Jean-Karim Heriche
4.4 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche19k wrote:

You could try Compare2Trees or TOPD/FMTS.

ADD COMMENTlink written 4.4 years ago by Jean-Karim Heriche19k
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