Question: Bowtie 2 Error
0
gravatar for sjbharathy
4.7 years ago by
sjbharathy0
India
sjbharathy0 wrote:

Hai all,

 

I am new to ngs works. Now i am trying bowtie2 for alignment of my reads and i made the index. When i run the bowtie2 align, the following error is coming. I tried the example file and i got the same error.

 

" Error: Encountered internal Bowtie 2 exception (#1)
Command: /usr/bin/bowtie2-align --wrapper basic-0 -x anv_S -u FN146_S1_L001_R1_001.fastq -s S1r1.sam "

Help me frnds, how can i rectify this error

ADD COMMENTlink modified 4.6 years ago by Biostar ♦♦ 20 • written 4.7 years ago by sjbharathy0

Can you provide the two calls for indexing and mapping which you used?

ADD REPLYlink modified 4.6 years ago • written 4.6 years ago by thackl2.7k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 976 users visited in the last hour