Question: Bowtie 2 Error
gravatar for sjbharathy
6.0 years ago by
sjbharathy0 wrote:

Hai all,


I am new to ngs works. Now i am trying bowtie2 for alignment of my reads and i made the index. When i run the bowtie2 align, the following error is coming. I tried the example file and i got the same error.


" Error: Encountered internal Bowtie 2 exception (#1)
Command: /usr/bin/bowtie2-align --wrapper basic-0 -x anv_S -u FN146_S1_L001_R1_001.fastq -s S1r1.sam "

Help me frnds, how can i rectify this error

ADD COMMENTlink modified 5.8 years ago by Biostar ♦♦ 20 • written 6.0 years ago by sjbharathy0

Can you provide the two calls for indexing and mapping which you used?

ADD REPLYlink modified 5.8 years ago • written 5.8 years ago by thackl2.8k
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