Question: How to process/visualize snp.matrix WGS data?
gravatar for fashiondesignrussian
4.1 years ago by
fashiondesignrussian50 wrote:

I have snp.matrix and phenotype.csv data. How to process them correctly? Are there any books/chapters/papers/tutorials and software? My task is to visualize and analyse the MDR tuberculosis whole genome data.

I could find SNP viewer and SNPeff only.



snp wgs • 1.2k views
ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by fashiondesignrussian50

The question shouldn't be what "can" you do, but how do you do something specific. Maybe you should chat with someone locally before trying to do any of this.

ADD REPLYlink written 4.1 years ago by Devon Ryan88k

Extending Devon's answer....  Someone thought that sequencing MDR tuberculosis was an important thing to do--why?  There exists a literature on MDR tuberculosis, as well.  What question(s) do you want to answer?

ADD REPLYlink written 4.1 years ago by Sean Davis25k
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