How to process/visualize snp.matrix WGS data?

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9.2 years ago

fashiondesignrussian ▴ 60

I have snp.matrix and phenotype.csv data. How to process them correctly? Are there any books/chapters/papers/tutorials and software? My task is to visualize and analyse the MDR tuberculosis whole genome data.

I could find SNP viewer and SNPeff only.

Thanks

SNP wgs • 2.2k views

ADD COMMENT • link updated 2.0 years ago by Ram 43k • written 9.2 years ago by fashiondesignrussian ▴ 60

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The question shouldn't be what "can" you do, but how do you do something specific. Maybe you should chat with someone locally before trying to do any of this.

ADD REPLY • link updated 2.0 years ago by Ram 43k • written 9.2 years ago by Devon Ryan 104k

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Extending Devon's answer.... Someone thought that sequencing MDR tuberculosis was an important thing to do--why? There exists a literature on MDR tuberculosis, as well. What question(s) do you want to answer?

ADD REPLY • link updated 2.0 years ago by Ram 43k • written 9.2 years ago by Sean Davis 26k

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