consensus sequence of complex estructural variants
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6.7 years ago
user230613 ▴ 310

Hi all , I would like to know if there is any tool to create a consensus FASTA sequence having a vcf file with complex SV's such as inversiones, duplications, translocations... I am looking for something like bcftools consensus but for SV's.

Thank you.

consensus estructural variant • 1.7k views
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if the SV is short Wham can provide the consensus: http://jewmanchue.github.io/wham/ . Delly also provides a consensus sequence. 

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