Question: Phylogenetic tree drawing with partial sequences
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gravatar for ha.roozbahany
4.0 years ago by
Iran, Islamic Republic Of
ha.roozbahany0 wrote:

Hi

Can I use partial sequences for phylogenetic tree drawing?

alignment • 1.6k views
ADD COMMENTlink modified 4.0 years ago by cdsouthan1.8k • written 4.0 years ago by ha.roozbahany0
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gravatar for cdsouthan
4.0 years ago by
cdsouthan1.8k
cdsouthan1.8k wrote:

We did  http://www.ncbi.nlm.nih.gov/pubmed/24381583

Sure its a compromise but if the % identity is reasonably evenly distributed, extended partials  (e.g. at least 50% of full length)  position in the tree at least well enough to be informative (but probably better for orthologs rather than paralogs)

 

 

ADD COMMENTlink modified 4.0 years ago • written 4.0 years ago by cdsouthan1.8k
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