Question: A tool for computing Gene Ontology Semantic Similarity
0
gravatar for Farhad
4.1 years ago by
Farhad10
Turkey
Farhad10 wrote:

I want to compute semantic similarity of proteins given their uniprotID,

I have found some online tools like http://www.paccanarolab.org/gosstoweb/, but it is busy all the time and providing organism name is required, I have a mixed list of proteins which include some viral proteins,

any similar online tool or a package in R will be really helpful.

your help would be really appreciated.

sequencing R gene • 1.2k views
ADD COMMENTlink modified 4.1 years ago by Jean-Karim Heriche18k • written 4.1 years ago by Farhad10
1
gravatar for Jean-Karim Heriche
4.1 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche18k wrote:

In R/bioconductor, there's GOSemSim, csbl.go, SemDist, GoSim and probably a few more.

ADD COMMENTlink written 4.1 years ago by Jean-Karim Heriche18k
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