Question: PhyML phylogeenetic tree figure generation
1
gravatar for kozhaki.seq
4.6 years ago by
kozhaki.seq50
Korea, Republic Of
kozhaki.seq50 wrote:

I run PhyML software and generated 3  output files as expected. But am in confusion how to generate phylogenetic tree figure from "myseq.phy_phyml_tree.txt file".  Looking at the phyml parameters  doesnt solve my problem. I would like to generate 'Original  PhyMLtree' as shown here http://www.atgc-montpellier.fr/phyml/alrt/.  What is the thing I am missing here! any idea?

 

 

ADD COMMENTlink modified 4.6 years ago by 5heikki8.5k • written 4.6 years ago by kozhaki.seq50
0
gravatar for 5heikki
4.6 years ago by
5heikki8.5k
Finland
5heikki8.5k wrote:

Is it in newick, nexus or some other format? You probably just have to load it up to some visualization program. Personally, I tend to use FigTree, Dendroscope and TreeGraph 2.

ADD COMMENTlink modified 4.6 years ago • written 4.6 years ago by 5heikki8.5k

Thanks @5heikki. TreeGraph 2 gave me the tree figure what I want.

ADD REPLYlink written 4.6 years ago by kozhaki.seq50
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