STRUCTURE software for GBS SNP data
2
1
Entering edit mode
6.1 years ago
dinesh ▴ 50

I have GBS SNP genotyped data in .hapmap format. i want to find the population structure through structure software. please tell me how to run this software. like the input format

SNP software error • 8.1k views
ADD COMMENT
0
Entering edit mode
ADD REPLY
3
Entering edit mode
6.1 years ago
Brice Sarver ★ 3.6k

The manual, always a good place to answer these sorts of questions.

If you can convert your data to PLINK format, you can run ADMIXTURE. It's easier and faster to run. STRUCTURE's input files' formats are a bit of a pain in the butt.

ADD COMMENT
1
Entering edit mode
5.9 years ago

You use this program http://www.cmpg.unibe.ch/software/PGDSpider/ 

ADD COMMENT

Login before adding your answer.

Traffic: 2141 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6