Question: R Circos: Command Error
0
gravatar for ewholling
5.4 years ago by
ewholling10
United States
ewholling10 wrote:

Hello all,

I'm currently using the RCircos package, but having some trouble with a specific command. Since my labels are too close together and overlapping, I want to use the RCircos.Get.Gene.Label.Locations(genomic.data) function. My data is working with the other commands, but when I try this command the following error message comes up. 

 

> genomic.data <- chrom.data

> RCircos.Get.Gene.Label.Locations(genomic.data)

Error in order(the.chr$Location) : argument 1 is not a vector

 

Does anyone know how to resolve this issue? My data format is: Chromosome, chromStart, chromEnd, Gene as directed.

Thanks in advance. 

R • 1.3k views
ADD COMMENTlink modified 5.2 years ago by Biostar ♦♦ 20 • written 5.4 years ago by ewholling10

There is some problem with your data; the order() function expects a vector of values that it can sort and is not finding it. You need to show a real example of your data, not just describe it.

ADD REPLYlink written 5.4 years ago by Neilfws48k
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