Question: GO enrichment analysis
0
gravatar for Maria
4.6 years ago by
Maria0
United States
Maria0 wrote:

Hello,

I'm having trouble getting the Gene ontology enrichment analysis of a given dataset to compare the best p values between Aracne and TOM. Please help.

 

thanks

wgcna go enrichment analysis R • 1.8k views
ADD COMMENTlink modified 4.6 years ago • written 4.6 years ago by Maria0

You forgot to post a question, or the problem you're having. 

ADD REPLYlink written 4.6 years ago by karl.stamm3.5k

Hi

I have this code GOenr=GOenrichmentAnalysis(moduleColors, allLLIDs, organism="mouse", nBestP=5); for the GOenrichmentAnalysis

I'm having issues getting the results using Aracne, CLR to compare it with TOM, to see which network construction method is better. What do I need to do in order to get the results from different adjacency such as Aracne, CLR, etc.

 

 

ADD REPLYlink written 4.6 years ago by Maria0
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